Pomfrets (genus Pampus), a highly commercial fishery resource distributed in the Indo-Western Pacific that includes Lessepsian migrants, have witnessed a series of systematic reforms. In this study, based on comprehensive sampling spanning type localities and coevals in the Northern Indian Ocean, the cryptic and valid species Stromateus griseus is resurrected from the synonymy and re-described as Pampus griseus (New Combination) based on 35 specimens from the Bay of Bengal, corroborated by a molecular analysis, which indicated a confined distribution of the species. The Bayesian phylogeny of the genus was reconstructed, incorporating redressed barcodes (582 nucleotides) and concatenated mitochondrial gene sequence data (1,822 nucleotides) generated from the recorded species P. candidus, P. chinensis and the neophyte along with sequences from GenBank entrusting the latest literature. The phylograms differed in topology as for seven valid species, and the one predicated on the concatenated data erected a highly supported polytomous clade for the P. cinereus complex (P. griseus, P. cinereus, and P. candidus) which shares synapomorphies. Pampus argenteus and P. minor, together, formed a sister clade to the rest. Climate-driven vicariant events during glacial epochs and the Indo-Pacific Barrier effect can be the drivers behind the Indian and Pacific Ocean sister lineages in P. chinensis. A multivariate analysis isolated the cryptic species from its congeners. This article portrays the systematics revision of genus Pampus with an integrative taxonomic approach compiling distinctive molecular, morphological, and anatomical features, revised key for species identification, taxonomic archives of Indian stromateids, and winds up with specific remarks.

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The genus Scomberomorus, with 18 nominal species, sustains a significant heterogeneous fishery throughout its range. The sole molecular systematic study of this genus concerned the species group S. regalis, which contains the new world taxa. The species diversity of Scomberomorus in the northern Indian Ocean has not been studied at the molecular level, often leading to misidentifications. Here, novel genetic data are provided that reconfigure species boundaries from the region. We used single and multilocus data (eight mitochondrial and three nuclear genes) to infer phylogenetic relationships, species delimitation, and the resurrection of a time-calibrated phylogenetic tree. Our aim was also to verify the hypothesis of geographical races in S. guttatus predicated on variable vertebral counts. Interestingly, all species delimitation analyses have recovered another highly cryptic species in the nominal S. guttatus previously believed to have an Indo-Pacific distribution. Scomberomorus guttatus (Bloch and Schneider, 1801) in the sensu stricto, is redeemed from its type locality based on genetic data and preliminary morphomeristic investigations and has a restricted distribution in the Bay of Bengal. The cryptic species Scomberomorus aff. guttatus which exhibits >10% genetic divergence from S. guttatus is resurrected here from the synonymy of the latter as Scomberomorus leopardus (Shaw, 1803). Widespread in the Indo-Pacific, this species contains two major molecular operational taxonomic units (MOTUs) with a divergence threshold of over 2% between them. Our analysis suggests that vertebral counts must be coupled with other features to identify the species/lineages in the nominal S. guttatus. The heterogeneity in the S. guttatus species group is discussed in relation to the ecological diversity of the region which facilitates larval recruitment and niche specialization. The results also revealed two allopatric putative species in S. commerson, found primarily in the Pacific and Indian Oceans. This study added genetic data from S. lineolatus and S. koreanus, not previously represented in the sequence repositories. Estimation of divergence time indicated that the Indo-West Pacific species group undergoes multiple diversification events besides the recent splits detected within S. leopardus.

Sthenoteuthis oualaniensis is known for its complex population structure with three major transoceanic forms (viz. middle‐sized, dwarf, and giant forms) whose taxonomic status has been disputed for decades. This integrated taxonomic study examines these prevenient morphotypes gathered on cruises in the Indian Ocean to ascertain their status in the evolutionary history of the species. Molecular analyses employing mitochondrial (COI, ND2) and nuclear (H3) markers revealed four genetically distinct and novel lineages of the species in the Indian Ocean, representing three morphotypes from the Arabian Sea and one from the Southern Indian Ocean. The mitochondrial‐based phylograms revealed two distinct clades in the species: “dwarf forms + giant form” and “middle‐sized forms,” which further branch into geographically structured evolutionary units. Species delimitation analyses recovered five distinct clades, namely, the Arabian Sea giant and dwarf forms, Equatorial, Eastern Typical, and Other Middle‐sized forms, representing the consensus molecular operational taxonomic units. H3 being heterozygous could not resolve the phylogeny. Haplotype network and AMOVA analysis of mtDNA genes indicated explicit phylogeographic structuring of haplotypes, whereas these outputs and PCA results were incongruent with the morphological grouping. Phenetic features distinguishing the morphotypes were sometimes plastic and mismatched with the genotypes. The giant form was genetically close to the dwarf forms, contradicting the earlier notion that it descended from the middle‐sized form. It may be assumed that the dwarf form evolved following sympatric speciation and adaptation to warm equatorial waters, while the focal features of the Western Arabian Sea guide toward allopatric speciation of the giant form.

The Indian black clam Villorita cyprinoides (Family: Cyrenidae), an extractive commercially exploited species with aquaculture importance contributing more than 70% of clam fishery in India, is endemic to the Indian peninsula. Currently, there is very sparse information, especially on the molecular data of Villorita. The present study aims to provide a comprehensive knowledge of mitogenome architecture and assess the phylogenetic status of Cyrenidae. This has resulted in reporting the first complete mitogenome of V. cyprinoides using next-generation sequencing technology. The A+T circular mitogenome was 15,880 bp long, exhibiting 13 protein-coding genes (PCGs) including ATP8 (absent in several bivalves), 22 transfer RNA, and two ribosomal RNA genes residing in the heavy strand in a clockwise orientation and a gene order akin to Corbicula fluminea. The molecular phylogeny inferred from a concatenated multi-gene sequence [14 mitochondrial (12 PCGs, rrnS and rrnL) and two nuclear genes (Histone H3, 18S rRNA)] from 47 representative species of superorder Imparidentia, clustered V. cyprinoides and Cyrenid clams to a single clade supporting the monophyly of Cyrenidae. The subsequent mitochondrial gene order analysis substantiates the close relationship of V. cyprinoides and C. fluminea, analogous to phylogenetic output. The multilocus tree topology calibrated with verified fossil data deciphered the origin and diversification of Cyrenid clams during late Triassic-early Jurassic. The data derived from this study shall contribute remarkably for further insights on cryptic species identification, molecular characterization of bivalve mitogenomes and mitochondrial evolutionary history of genus Villorita. Moreover, complete mitogenome can aid in potential marker development for assessing the genetic health of black clam populations.