The green fluorescent protein (GFP) of the jellyfish Aequorea Victoria has attracted widespread interest since the discovery that its chromophore is generated by the autocatalytic, posttranslational cyclization and oxidation of a hexapeptide unit. This permits fusion of the DNA sequence of GFP with that of any protein whose expression or transport can then be readily monitored by sensitive fluorescence methods without the need to add exogenous fluorescent dyes. The excited state dynamics of GFP were studied following photoexcitation of each of its two strong absorption bands in the visible using fluorescence upconversion spectroscopy (about 100 fs time resolution). It is shown that excitation of the higher energy feature leads very rapidly to a form of the lower energy species, and that the excited state interconversion rate can be markedly slowed by replacing exchangeable protons with deuterons. This observation and others lead to a model in which the two visible absorption bands correspond to GFP in two ground-state conformations. These conformations can be slowly interconverted in the ground state, but the process is much faster in the excited state. The observed isotope effect suggests that the initial excited state process involves a proton transfer reaction that is followed by additional structural changes. These observations may help to rationalize and motivate mutations that alter the absorption properties and improve the photo stability of GFP.The green fluorescent protein (GFP) of the jellyfish Aequorea Victoria has attracted widespread interest since the discovery that its chromophore is generated by the autocatalytic, posttranslational cyclization and oxidation of a hexapeptide unit at positions 64-69 (1, 2). We have investigated the electronic absorption and ultra-fast emission from GFP and have discovered surprisingly rich photophysics and photochemistry, interesting in their own right and relevant to applications and modifications of this system.The recent interest in this protein builds on many years of effort. The precise chromophore structure and conformation are still subject to investigation, and a three-dimensional structure of the protein is not yet available (3). The chromophore absorption in the visible region consists of two broad bands shown in Fig. 1A. Although these two bands could correspond to transitions from the ground to the first and second singlet excited states of the same chromophore, their ratio depends on conditions such as pH, temperature, and ionic strength (4) suggesting that two different, interconvertible forms of the chromophore may be present. By examining the excited state dynamics of the chromophore, both in its native state and following deuterium exchange, we demonstrate that two different forms are present and that their interconversion in the excited state depends on proton motion. Because GFP fluorescence is insensitive to oxygen quenching, it has been suggested that the chromophore is in a solvent inaccessible region (5). The fluorescence is stable in...

The fusion and spreading of phospholipid bilayers on glass surfaces was investigated as a function of pH and ionic strength. Membrane fusion to the support was favorable at high ionic strength and low pH for vesicles containing a net negative charge; however, neutral and positively charged vesicles fused under all conditions attempted. This result suggests that van der Waals and electrostatic interactions govern the fusion process. Membrane spreading over a planar surface was favorable at low pH regardless of the net charge on the bilayer, and the process is driven by van der Waals forces. On the other hand membrane propagation is impeded at high pH or on highly curved surfaces. In this case a combination of hydration and bending interactions is primarily responsible for arresting the spreading process. These results provide a framework for understanding many of the factors that influence the effectiveness of scratches on planar supported bilayers as barriers to lateral diffusion and lead to a simple method to heal these scratches.

Stark spectroscopy has been applied to a wide range of molecular systems and materials. A generally useful method for obtaining electronic and vibrational Stark spectra that does not require sophisticated equipment is described. By working with frozen glasses it is possible to study nearly any molecular system, including ions and proteins. Quantitative analysis of the spectra provides information on the change in dipole moment and polarizability associated with a transition. The change in dipole moment reflects the degree of charge separation for a transition, a quantity of interest to a variety of fields. The polarizability change describes the sensitivity of a transition to an electrostatic field such as that found in a protein or an ordered synthetic material. Applications to donor-acceptor polyenes, transition metal complexes (metal-to-ligand and metal-to-metal mixed valence transitions), and nonphotosynthetic biological systems are reviewed.

CONSPECTUS Over the past decade, we have developed a spectroscopic approach to measure electric fields inside matter with high spatial (<1 Å) and field (<1 MV/cm) resolution. The approach hinges on exploiting a physical phenomenon known as the vibrational Stark effect (VSE), which ultimately provides a direct mapping between observed vibrational frequencies and electric fields. Therefore, the frequency of a vibrational probe encodes information about the local electric field in the vicinity around the probe. The VSE method has enabled us to understand in great detail the underlying physical nature of several important biomolecular phenomena, such as drug–receptor selectivity in tyrosine kinases, catalysis by the enzyme ketosteroid isomerase, and unidirectional electron transfer in the photosynthetic reaction center. Beyond these specific examples, the VSE has provided a conceptual foundation for how to model intermolecular (noncovalent) interactions in a quantitative, consistent, and general manner. The starting point for research in this area is to choose (or design) a vibrational probe to interrogate the particular system of interest. Vibrational probes are sometimes intrinsic to the system in question, but we have also devised ways to build them into the system (extrinsic probes), often with minimal perturbation. With modern instruments, vibrational frequencies can increasingly be recorded with very high spatial, temporal, and frequency resolution, affording electric field maps correspondingly resolved in space, time, and field magnitude. In this Account, we set out to explain the VSE in broad strokes to make its relevance accessible to chemists of all specialties. Our intention is not to provide an encyclopedic review of published work but rather to motivate the underlying framework of the methodology and to describe how we make and interpret the measurements. Using certain vibrational probes, benchmarked against computer models, it is possible to use the VSE to measure absolute electric fields in arbitrary environments. The VSE approach provides an organizing framework for thinking generally about intermolecular interactions in a quantitative way and may serve as a useful conceptual tool for molecular design.

Enzymes use protein architecture to impose specific electrostatic fields onto their bound substrates, but the magnitude and catalytic effect of these electric fields have proven difficult to quantify with standard experimental approaches. Using vibrational Stark effect spectroscopy, we found that the active site of the enzyme ketosteroid isomerase (KSI) exerts an extremely large electric field onto the C=O chemical bond that undergoes a charge rearrangement in KSI’s rate-determining step. Moreover, we found that the magnitude of the electric field exerted by the active site strongly correlates with the enzyme’s catalytic rate enhancement, enabling us to quantify the fraction of the catalytic effect that is electrostatic in origin. The measurements described here may help explain the role of electrostatics in many other enzymes and biomolecular systems.

Lithographically patterned grids of photoresist, aluminum oxide, or gold on oxidized silicon substrates were used to partition supported lipid bilayers into micrometer-scale arrays of isolated fluid membrane corrals. Fluorescently labeled lipids were observed to diffuse freely within each membrane corral but were confined by the micropatterned barriers. The concentrations of fluorescent probe molecules in individual corrals were altered by selective photobleaching to create arrays of fluid membrane patches with differing compositions. Application of an electric field parallel to the surface induced steady-state concentration gradients of charged membrane components in the corrals. In addition to producing patches of membrane with continuously varying composition, these gradients provide an intrinsically parallel means of acquiring information about molecular properties such as the diffusion coefficient in individual corrals.

Vibrational Stark effects, which are the effects of electric fields on vibrational spectra, were measured for the C−N stretch mode of several small nitriles. Samples included unconjugated and conjugated nitriles, and mono- and dinitriles. They were immobilized in frozen 2-methyl-tetrahydrofuran glass and analyzed in externally applied electric fields using an FTIR; details of the methodology are presented. Difference dipole moments, Δ μ, equivalent to the linear Stark tuning rate, range from 0.01/f to 0.04/f Debye (0.2/f to 0.7/f cm-1/(MV/cm)) for most samples, with aromatic compounds toward the high end and symmetric dinitriles toward the low end (the local field correction factor, f, is expected to be similar for all these samples). Most quadratic Stark effects are small and negative, while transition polarizabilities are positive and have a significant effect on Stark line shapes. For aromatic nitriles, transition dipoles and Δμ values correlate with Hammett numbers. Symmetric dinitrile Δμ values decrease monotonically with increasing conjugation of the connecting bridge, likely due to improved mechanical coupling and, to a lesser extent, an increased population of inversion symmetric conformations. Δμ values are close to those expected from bond anharmonicity and ab initio predictions.

What happens inside an enzyme’s active site to allow slow and difficult chemical reactions to occur so rapidly? This question has occupied biochemists’ attention for a long time. Computer models of increasing sophistication have predicted an important role for electrostatic interactions in enzymatic reactions, yet this hypothesis has proved vexingly difficult to test experimentally. Recent experiments utilizing the vibrational Stark effect make it possible to measure the electric field a substrate molecule experiences when bound inside its enzyme’s active site. These experiments have provided compelling evidence supporting a major electrostatic contribution to enzymatic catalysis. Here, we review these results and develop a simple model for electrostatic catalysis that enables us to incorporate disparate concepts introduced by many investigators to describe how enzymes work into a more unified framework stressing the importance of electric fields at the active site.