Dissolved organic matter (DOM) in aquatic environments forms a vast reservoir of carbon present as a complex supermixture of compounds. An efficient approach to tracking the production and removal of specific DOM fractions is needed across disciplines, for purposes that range from improving global carbon budgets to optimizing water treatment in engineered systems. Although widely used to study DOM, fluorescence spectroscopy has yet to deliver specific fractions with known spectral properties and predictable distributions. Here, we mathematically isolate four visible-wavelength fluorescent fractions in samples from contrasting lake, river, and ocean environments. Using parallel factor analysis (PARAFAC), we show that most measured fluorescence in environmental samples can be explained by ubiquitous spectra with nearly stable optical properties and photodegradation behaviors over environmental pH gradients. Sample extraction changed bulk fluorescence spectra but not the number or shape of underlying PARAFAC components, while photobleaching preferentially removed the two longest-wavelength components. New approaches to analyzing fluorescence data sets incorporating these findings should improve the interpretation of DOM fluorescence and increase its utility for tracing organic matter biogeochemistry in aquatic systems.

Marine chromophoric dissolved organic matter (CDOM) and its related fluorescent components (FDOM), which are widely distributed but highly photobleached in the surface ocean, are critical in regulating light attenuation in the ocean. However, the origins of marine FDOM are still under investigation. Here we show that cultured picocyanobacteria, Synechococcus and Prochlorococcus, release FDOM that closely match the typical fluorescent signals found in oceanic environments. Picocyanobacterial FDOM also shows comparable apparent fluorescent quantum yields and undergoes similar photo-degradation behaviour when compared with deep-ocean FDOM, further strengthening the similarity between them. Ultrahigh-resolution mass spectrometry (MS) and nuclear magnetic resonance spectroscopy reveal abundant nitrogen-containing compounds in Synechococcus DOM, which may originate from degradation products of the fluorescent phycobilin pigments. Given the importance of picocyanobacteria in the global carbon cycle, our results indicate that picocyanobacteria are likely to be important sources of marine autochthonous FDOM, which may accumulate in the deep ocean.

Marine dissolved organic matter (DOM) in surface and deep waters of the eastern Atlantic Ocean and Sargasso Sea was analyzed by excitation emission matrix (EEM) fluorescence spectroscopy and parallel factor analysis (PARAFAC). Photo-degradation with semi-continuous monitoring of EEMs and absorbance spectra was used to measure the photo-degradation kinetics and changes of the PARAFAC components in a depth profile of DOM at the Bermuda Atlantic Time Series (BATS) station in the Sargasso Sea. A five component model was fit to the EEMs, which included traditional terrestrial-like, marine-like, and protein-like components. Terrestrial-like components showed the expected high photo-reactivity, but surprisingly, the traditional marine-like peak showed slight photo-production in surface waters, which may account for its prevalence in marine systems. Surface waters were depleted in photo-labile components while protein-like fluorescent components were enriched, consistent with previous studies. Ultra-high resolution mass spectrometry detected unique aliphatic compounds in the surface waters at the BATS site, which may be photo-produced or photo-stable. Principle component and canonical analysis showed strong correlations between relative contributions of unsaturated/aromatic molecular formulas and depth, with aliphatic compounds more prevalent in surface waters and aromatic compounds in deep waters. Strong correlations were seen between these aromatic compounds and humic-like fluorescent components. The rapid photo-degradation of the deep-sea fluorescent DOM in addition to the surface water relative depletion of aromatic compounds suggests that deep-sea fluorescent DOM may be too photochemically labile to survive during overturning circulation.

A novel semi-continuous excitation emission matrix (EEM) fluorescence and absorbance monitoring system has been developed. Full EEMs were collected simultaneously with absorbance spectra every 20 min during 24 h solar-simulated irradiation experiments, and the kinetic change of fluorescence of Suwannee River natural organic matter IHSS standard material (SRNOM) at various pH values was investigated. Parallel factor analysis (PARAFAC) was then used to isolate the photo-labile and pH-influenced fluorescent components of SRNOM. Kinetic analysis showed increasing rates of fluorescence loss with increasing pH. This has significant implications for the photo-degradation of dissolved natural organic matter during estuarine mixing, when large increases of pH are common. The influence of pH on fluorescence and photo-degradation kinetics emphasizes the need for pH to be monitored and accurately controlled during laboratory experiments. It is also highly recommended that when constructing PARAFAC models or monitoring changes in fluorescence data between samples of different origins, that the pH be held constant to remove any potential artifacts or misinterpretation of data.

Natural dissolved organic matter (DOM) is the major absorber of sunlight in most natural waters and a critical component of carbon cycling in aquatic systems. The combined effect of light absorbance properties and related photo-production of reactive species are essential in determining the reactivity of DOM. Optical properties and in particular excitation-emission matrix fluorescence spectroscopy combined with parallel factor analysis (EEM-PARAFAC) have been used increasingly to track sources and fate of DOM. Here we describe studies conducted in water from two estuarine systems in the Florida Everglades, with a salinity gradient of 2 to 37 and dissolved organic carbon concentrations from 19.3 to 5.74 mg C L(-1), aimed at assessing how the quantity and quality of DOM is coupled to the formation rates and steady-state concentrations of reactive species including singlet oxygen, hydroxyl radical, and the triplet excited state of DOM. These species were related to optical properties and PARAFAC components of the DOM. The formation rate and steady-state concentration of the carbonate radical was calculated in all samples. The data suggests that formation rates, particularly for singlet oxygen and hydroxyl radicals, are strongly coupled to the abundance of terrestrial humic-like substances. A decrease in singlet oxygen, hydroxyl radical, and carbonate radical formation rates and steady-state concentration along the estuarine salinity gradient was observed as the relative concentration of terrestrial humic-like DOM decreased due to mixing with microbial humic-like and protein-like DOM components, while the formation rate of triplet excited-state DOM did not change. Fluorescent DOM was also found to be more tightly coupled to reactive species generation than chromophoric DOM.

Excitation−emission matrices (EEMs) constructed from fluorescence measurements are increasingly used for the characterization of chromophoric dissolved organic matter (CDOM) and light-absorbing atmospheric organic aerosols known as brown carbon (BrC). There is a high uncertainty in the effect of BrC aerosols on climate because their optical properties depend on the amount of time they spent in the atmosphere. In order to aid in the quantification of BrC aerosols' contribution to radiative forcing, we investigated the effect of solar radiation on the fluorescence, expressed as EEMs, and absorption spectra of the water-soluble fraction of BrC species formed by the high-NOx photooxidation of benzene, toluene, pxylene, and naphthalene. The BrC samples were prepared in a smog chamber, extracted in water, and irradiated in a solar simulator at a fixed pH of 3, representative of aerosol liquid water, or at a fixed pH of 6, representative of cloudwater. Semicontinuous fluorescence and absorbance measurements were carried out during the irradiation at 20 min intervals for 44 h. The absorption coefficients depended on the solution pH, with the solutions at pH 6 absorbing stronger than solutions at pH 3. All samples underwent a decrease in absorption coefficient at all visible wavelengths, whereas fluorescence intensities showed both increases and decreases in different regions of the EEMs. Upon comparison with CDOM samples, the fluorescence intensity of all secondary organic aerosol (SOA) samples decreased in the region of the EEMs where the characteristic terrestrial humic-like C peak occurs. These experimental observations suggest that (i) this type of BrC will have different effects on climate depending on whether it ends up in an acidic or neutral environment; (ii) exposure to UV radiation will diminish the ability of this type of BrC to affect climate on a time scale of about a day; (iii) fluorescence by BrC compounds has a minimal effect on aerosol radiative forcing; (iv) photooxidized aromatics may be closely related, in terms of optical properties, to CDOM found in fresh waters.

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Parallel factor analysis (PARAFAC) applied to fluorescence excitation emission matrices (EEMs) allows quantitative assessment of the composition of fluorescent dissolved organic matter (DOM). In this study, we fit a four-component EEM-PARAFAC model to characterize DOM extracted from poultry litter. The data set included fluorescence EEMs from 291 untreated, irradiated (253.7 nm, 310-410 nm), and oxidized (UV-HO, ozone) poultry litter extracts. The four components were identified as microbial humic-, terrestrial humic-, tyrosine-, and tryptophan-like fluorescent signatures. The Tucker's congruence coefficients for components from the global (i.e., aggregated sample set) model and local (i.e., single poultry litter source) models were greater than 0.99, suggesting that the global EEM-PARAFAC model may be suitable to study poultry litter DOM from individual sources. In general, the transformation trends of the four fluorescence components were comparable for all poultry litter sources tested. For irradiation at 253.7 nm, ozonation, and UV-HO advanced oxidation, transformation of the humic-like components was slower than that of the tryptophan-like component. The opposite trend was observed for irradiation at 310-410 nm, due to differences in UV absorbance properties of components. Compared to the other EEM-PARAFAC components, the tyrosine-like component was fairly recalcitrant in irradiation and oxidation processes. This novel application of EEM-PARAFAC modeling provides insight into the composition and fate of agricultural DOM in natural and engineered systems.