The most common methods for combining different phylogenetic trees with uneven but overlapping taxon sampling are the Matrix Representation with Parsimony (MRP) and consensus tree methods. Although straightforward, some steps of MRP are time-consuming and risky when manually performed, especially the preparation of the matrix representations from the original topologies, and the creation of the single matrix containing all the information of the individual trees. Here we present Building MRP-Matrices (BuM), a free online tool for generating a combined matrix, following Baum and Ragan coding scheme, from files containing phylogenetic trees in parenthetical format.
Aim: Cladistic biogeography is all about congruence: when individual area cladograms coincide, they result in a general area cladogram that reveals shared history. However, the complexities of the natural world hamper the reconstruction of fully solved biogeographical patterns. Herein, we present SAMBA (super area-cladogram after resolving multiple biogeographical ambiguities), a pattern-based method combining supertrees and area cladograms to depict the relationships among areas. We also present a prototypical implementation of SAMBA as a web-based framework named iSAMBA.
Location: Global.Taxon: Any taxon can be analysed with SAMBA.Methods: SAMBA is based on phylogenetic supertrees, a technique that combines previously calculated phylogenetic trees to produce a general area cladogram representing conciliatory and non-ambiguous patterns of relationships. In our method, the input topologies are individual area cladograms. SAMBA is implemented through a web-based framework named iSAMBA. We analysed a theoretical and a real scenario to compare SAMBA with primary Brooks parsimony analysis (BPA), component analysis, three area statement analysis (TAS) and the transparent method.Results: SAMBA produces area cladograms that converge with the actual history of fragmentations of both hypothetical and real scenarios used as examples of implementation of the method. Primary BPA, component analysis, TAS and the transparent method are much more affected by the "biogeographical noise" (e.g. multiple areas in a single terminal, paralogies and missing areas) than SAMBA.Main Conclusions: SAMBA results in more informative general area cladograms than other pattern-based biogeographical methods. SAMBA reveals shared patterns of biotic distribution without generating multiple unreliable area cladograms. The main advantage of SAMBA is the simplicity of using a single technique to extract biogeographical information from individual area cladograms and combine them to depict a non-ambiguous general pattern of relationships among areas.
As relações evolutivas dentro de Metazoa são alvos de debates há décadas. As raízes da compreensão de seus relacionamentos filogenéticos surgiram através da análise de características morfológicas, seguidas de técnicas moleculares cada vez mais sofisticadas, como a filogenômica. Estudos provenientes de dados moleculares trouxeram grandes contribuições propondo novas hipóteses, mas neste momento ainda existem incertezas advindas de problemas de amostragem e técnicas moleculares, resultando em lacunas de conhecimento. No presente trabalho discutimos hipóteses da literatura sobre o posicionamento de alguns táxons chave na evolução dos animais, como Porifera, Ctenophora, Placozoa e Chaetognatha, além de discutir relações internas de grupos mais diversos, como Ecdysozoa, Spiralia e Deuterostomia. Por fim, discutimos suas implicações e consequências para o entendimento das relações entre os metazoários e suas trajetórias evolutivas.
Popularly known as horse flies or deer flies, Tabanidae, has 4.400 described species distributed worldwide. Most of the females are hematophagous, but several species are also flower visitors. Cretaceous fossils of Tabanidae are scarce and the known fossil species have plesiomorphic features unknown in modern horse flies. Here, we revised the taxonomy of the Tabanidae from the Crato Formation of Brazil describing a new genus, Araripusgen. nov., and two new species – Araripus crassitibialissp. nov. and Cratotabanus cearensissp. nov. The holotype of Cratotabanus stonemyomorphus, the type species of Cratotabanus, is redescribed, and the male is described for the first time. In addition, we investigate the phylogenetic position of Cretaceous horse fly fossils using morphological characters in the context of a wider analysis also including representatives of extant lineages.
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