We created nanometer-scale transmembrane channels in lipid bilayers using self-assembled DNA-based nanostructures. Scaffolded DNA origami was used to create a stem that penetrates and spans a lipid membrane, and a barrel-shaped cap that adheres to the membrane in part via 26 cholesterol moieties. In single-channel electrophysiological measurements, we find similarities to the response of natural ion channels, such as conductances on the order of 1 nS and channel gating. More pronounced gating was seen for mutations in which a single DNA strand of the stem protruded into the channel. In single-molecule translocation experiments, we highlight one of many potential applications of the synthetic channels, namely as single DNA molecule sensing devices.

The fast kinetics of induction and relaxation of bacteriochlorophyll prompt and delayed fluorescence together with absorption changes of the reaction center (RC) dimer (P) were measured by combination of flashes from laser diodes in intact cells of wild type, carotenoidless (R-26) and cytochrome c 2 deficient (CYCA) mutants of photosynthetic bacteria Rhodobacter sphaeroides. The fluorescence induction under high intensity of continuous light splits into fast and slow rises both overlapped by the (carotenoid and/or bacteriochlorophyll) triplet quenching. The fast phase is purely photochemical as it depends strongly on the number of photons absorbed. The slow phase is the combination of thermal and photochemical reactions and reflects the multiple turnover of the system. Upon short flash, the fluorescence yield cannot reach the maximum due to partial reopening of the RCs by rapid donor and acceptor side reactions. Longer flashes are needed to close the RC completely. Contrary to higher plants, the kinetics of induction and relaxation of the fluorescence yield in bacteria are controlled principally by P þ . The reactions on the quinone side play minor role. The quantitative determination of the cyclic electron transfer rate can be based on calibration to the quantity of P þ . 2797-SympDesign and Engineering of a Light-Activated Potassium Channel

Nanopore translocation experiments are increasingly applied to probe the secondary structures of RNA and DNA molecules. Here, we report two vital steps toward establishing nanopore translocation as a tool for the systematic and quantitative analysis of polynucleotide folding: 1), Using α-hemolysin pores and a diverse set of different DNA hairpins, we demonstrate that backward nanopore force spectroscopy is particularly well suited for quantitative analysis. In contrast to forward translocation from the vestibule side of the pore, backward translocation times do not appear to be significantly affected by pore-DNA interactions. 2), We develop and verify experimentally a versatile mesoscopic theoretical framework for the quantitative analysis of translocation experiments with structured polynucleotides. The underlying model is based on sequence-dependent free energy landscapes constructed using the known thermodynamic parameters for polynucleotide basepairing. This approach limits the adjustable parameters to a small set of sequence-independent parameters. After parameter calibration, the theoretical model predicts the translocation dynamics of new sequences. These predictions can be leveraged to generate a baseline expectation even for more complicated structures where the assumptions underlying the one-dimensional free energy landscape may no longer be satisfied. Taken together, backward translocation through α-hemolysin pores combined with mesoscopic theoretical modeling is a promising approach for label-free single-molecule analysis of DNA and RNA folding.

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