International audienceCoccolithophores have influenced the global climate for over 200 million years1. These marine phytoplankton can account for 20 per cent of total carbon fixation in some systems2. They form blooms that can occupy hundreds of thousands of square kilometres and are distinguished by their elegantly sculpted calcium carbonate exoskeletons (coccoliths), rendering them visible from space3. Although coccolithophores export carbon in the form of organic matter and calcite to the sea floor, they also release CO2 in the calcification process. Hence, they have a complex influence on the carbon cycle, driving either CO2 production or uptake, sequestration and export to the deep ocean4. Here we report the first haptophyte reference genome, from the coccolithophore Emiliania huxleyi strain CCMP1516, and sequences from 13 additional isolates. Our analyses reveal a pan genome (core genes plus genes distributed variably between strains) probably supported by an atypical complement of repetitive sequence in the genome. Comparisons across strains demonstrate that E. huxleyi, which has long been considered a single species, harbours extensive genome variability reflected in different metabolic repertoires. Genome variability within this species complex seems to underpin its capacity both to thrive in habitats ranging from the equator to the subarctic and to form large-scale episodic blooms under a wide variety of environmental conditions

The Southern Ocean houses a diverse and productive community of organisms 1,2 . Unicellular eukaryotic diatoms are the main primary producers in this environment, where photosynthesis is limited by low concentrations of dissolved iron and large seasonal fluctuations in light, temperature and the extent of sea ice 3-7 . How diatoms have adapted to this extreme environment is largely unknown. Here we present insights into the genome evolution of a cold-adapted diatom from the Southern Ocean, Fragilariopsis cylindrus 8,9 , based on a comparison with temperate diatoms. We find that approximately 24.7 per cent of the diploid F. cylindrus genome consists of genetic loci with alleles that are highly divergent (15.1 megabases of the total genome size of 61.1 megabases). These divergent alleles were differentially expressed across environmental conditions, including darkness, low iron, freezing, elevated temperature and increased CO 2 . Alleles with the largest ratio of non-synonymous to synonymous nucleotide substitutions also show the most pronounced condition-dependent expression, suggesting a correlation between diversifying selection and allelic differentiation.

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[1] The region off Cape Blanc along the northwest African coast is dominated by persistent upwelling and strong activity of small-scale eddies, filaments, and jets. Vertical particle camera profiles obtained during recent cruises in this region show that there exist two well-marked maxima of particle abundance in the water column, one at the surface and the other in subsurface layers between 200 m and 400 m depths. Using a highresolution (2.7 km) terrain-following coordinate ocean model with built-in ecosystem and sediment transport modules, we show that the surface particle maximum can be explained by local productivity, while the deeper, subsurface particle cloud most likely originates from particulate material eroded from the shallow shelf and transported offshore by vigorous filament activity and dynamic features of the flow. In the numerical experiments, particles are produced either by primary production in the surface layer or from prescribed sediment sources to mimic suspension and erosion along the shelf areas. Good agreement of modeled particle distributions with the data is achieved with a typical settling velocity of 5 m day À1. Time-averaged effective transport patterns of particles reveal distinct maxima between 20.5°N and 23.5°N off Cape Blanc. In the south of Cape Bojador and off Cape Timiris, on the other hand, the effective transport distance patterns suggest energetic offshore activity.Citation: Karakaş, G., N. Nowald, M. Blaas, P. Marchesiello, S. Frickenhaus, and R. Schlitzer (2006), High-resolution modeling of sediment erosion and particle transport across the northwest African shelf,

In aquatic-mating pinnipeds, acoustic communication plays an important role in male competition and mate attraction. Vocal repertoire size and composition during the breeding season varies between species and is presumed to be a product of interspecific differences in sexual selection. In this study, we examine seasonal and diel patterns in acoustic repertoire size, composition and call activity of 4 Antarctic pinniped species: Weddell seal Leptonychotes weddellii, leopard seal Hydrurga leptonyx, Ross seal Ommatophoca rossii and crabeater seal Lobodon carcinophaga. An

Kelps, brown algae of the order Laminariales, dominate rocky shores and form huge kelp beds which provide habitat and nurseries for various marine organisms. Whereas the basic physiological and ecophysiological characteristics of kelps are well studied, the molecular processes underlying acclimation to different light and temperature conditions are still poorly understood. Therefore we investigated the molecular mechanisms underlying the physiological acclimation to light and temperature stress. Sporophytes of S. latissima were exposed to combinations of light intensities and temperatures, and microarray hybridizations were performed to determine changes in gene expression patterns. This first large-scale transcriptomic study of a kelp species shows that S. latissima responds to temperature and light stress with a multitude of transcriptional changes: up to 32% of genes showed an altered expression after the exposure experiments. High temperature had stronger effects on gene expression in S. latissima than low temperature, reflected by the higher number of temperature-responsive genes. We gained insights into underlying molecular processes of acclimation, which includes adjustment of the primary metabolism as well as induction of several ROS scavengers and a sophisticated regulation of Hsps. We show that S. latissima, as a cold adapted species, must make stronger efforts for acclimating to high than to low temperatures. The strongest response was caused by the combination of high temperatures with high light intensities, which proved most harmful for the alga.

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Dinoflagellates are microbial eukaryotes that have exceptionally large nuclear genomes; however, their organelle genomes are small and fragmented and contain fewer genes than those of other eukaryotes. The genus Amoebophrya (Syndiniales) comprises endoparasites with high genetic diversity that can infect other dinoflagellates, such as those forming harmful algal blooms (e.g., Alexandrium). We sequenced the genome (~100 Mb) of Amoebophrya ceratii to investigate the early evolution of genomic characters in dinoflagellates. The A. ceratii genome encodes almost all essential biosynthetic pathways for self-sustaining cellular metabolism, suggesting a limited dependency on its host. Although dinoflagellates are thought to have descended from a photosynthetic ancestor, A. ceratii appears to have completely lost its plastid and nearly all genes of plastid origin. Functional mitochondria persist in all life stages of A. ceratii, but we found no evidence for the presence of a mitochondrial genome. Instead, all mitochondrial proteins appear to be lost or encoded in the A. ceratii nucleus.