Understanding the genomic basis of adaptive divergence in the presence of gene flow remains a major challenge in evolutionary biology. In prickly sculpin (Cottus asper), an abundant euryhaline fish in northwestern North America, high genetic connectivity among brackish-water (estuarine) and freshwater (tributary) habitats of coastal rivers does not preclude the build-up of neutral genetic differentiation and emergence of different life history strategies. Because these two habitats present different osmotic niches, we predicted high genetic differentiation at known teleost candidate genes underlying salinity tolerance and osmoregulation. We applied whole-genome sequencing of pooled DNA samples (Pool-Seq) to explore adaptive divergence between two estuarine and two tributary habitats. Paired-end sequence reads were mapped against genomic contigs of European Cottus, and the gene content of candidate regions was explored based on comparisons with the threespine stickleback genome. Genes showing signals of repeated differentiation among brackish-water and freshwater habitats included functions such as ion transport and structural permeability in freshwater gills, which suggests that local adaptation to different osmotic niches might contribute to genomic divergence among habitats. Overall, the presence of both repeated and unique signatures of differentiation across many loci scattered throughout the genome is consistent with polygenic adaptation from standing genetic variation and locally variable selection pressures in the early stages of life history divergence.
When females search for mates and their perceived risk of predation increases, they less often express preferences for males that use conspicuous courtship signals, relaxing sexual selection on production of these signals. Here, we report an apparent exception to this general pattern. Courting male fiddler crabs Uca beebei sometimes build pillars of mud at the openings to their burrows in which crabs mate. Females visit several males before they choose a mate by staying and breeding in their burrows, and they preferentially visit males with pillars. Previous studies suggested that this preference is based on a visual orientation behaviour that may reduce females' risk of predation while searching for a mate. We tested this idea by determining whether the female preference for males with pillars increases with perceived predation risk. We attracted avian predators to where crabs were courting and measured the rates that sexually receptive females visited courting males with and without mud pillars. Under elevated risk, females continued to search for mates and they showed a stronger relative preference for males with pillars. Thus, when predation risk is high, females may continue to express preferences that are under natural selection because they help females avoid predation, strengthening sexual selection for use of the preferred signal.
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