The SARS-CoV-2 (COVID-19) pandemic spotlighted the importance of moving quickly with biomedical research. However, as the number of biomedical research papers continue to increase, the task of finding relevant articles to answer pressing questions has become significant. In this work, we propose a textual data mining tool that supports literature search to accelerate the work of researchers in the biomedical domain. We achieve this by building BioMedBERT, a neural-based deep contextual understanding model for Question-Answering (QA) and Information Retrieval tasks. We also leverage the new BREATHE dataset which is one of the largest available datasets of biomedical research literature, containing abstracts and full-text articles from ten different biomedical literature sources on which we pre-train our BioMedBERT model. Our work achieves state-of-the-art results on the QA fine-tuning task on BioASQ 5b, 6b and 7b datasets. In addition, we observe superior relevant results when BioMedBERT embeddings are used with Elasticsearch for the Information Retrieval task on the intelligently formulated BioASQ dataset. We believe our diverse dataset and our unique model architecture are what led us to achieve the state-of-the-art results for QA and IR tasks.
In the realms of computer vision, it is evident that deep neural networks perform better in a supervised setting with a large amount of labeled data. The representations learned with supervision are not only of high quality but also helps the model in enhancing its accuracy. However, the collection and annotation of a large dataset are costly and time-consuming. To avoid the same, there has been a lot of research going on in the field of unsupervised visual representation learning especially in a self-supervised setting. Amongst the recent advancements in selfsupervised methods for visual recognition, in SimCLR Chen et al. shows that good quality representations can indeed be learned without explicit supervision. In SimCLR, the authors maximize the similarity of augmentations of the same image and minimize the similarity of augmentations of different images. A linear classifier trained with the representations learned using this approach yields 76.5% top-1 accuracy on the ImageNet ILSVRC-2012 dataset. In this work, we propose that, with the normalized temperature-scaled cross-entropy (NT-Xent) loss function (as used in SimCLR), it is beneficial to not have images of the same category in the same batch. In an unsupervised setting, the information of images pertaining to the same category is missing. We use the latent space representation of a denoising autoencoder trained on the unlabeled dataset and cluster them with k-means to obtain pseudo labels. With this apriori information we batch images, where no two images from the same category are to be found. We report comparable performance enhancements on the CIFAR10 dataset and a subset of the ImageNet dataset 1 . We refer to our method as G-SimCLR 2 3 .
In this paper, we present a novel Heavy-Tailed Stochastic Policy Gradient (HT-PSG) algorithm to deal with the challenges of sparse rewards in continuous control problems. Sparse reward is common in continuous control robotics tasks such as manipulation and navigation, and makes the learning problem hard due to non-trivial estimation of value functions over the state space. This demands either reward shaping or expert demonstrations for the sparse reward environment. However, obtaining high-quality demonstrations is quite expensive and sometimes even impossible. We propose a heavytailed policy parametrization along with a modified momentumbased policy gradient tracking scheme (HT-SPG) to induce a stable exploratory behavior to the algorithm. The proposed algorithm does not require access to expert demonstrations. We test the performance of HT-SPG on various benchmark tasks of continuous control with sparse rewards such as 1D Mario, Pathological Mountain Car, Sparse Pendulum in OpenAI Gym, and Sparse MuJoCo environments (Hopper-v2). We show consistent performance improvement across all tasks in terms of high average cumulative reward. HT-SPG also demonstrates improved convergence speed with minimum samples, thereby emphasizing the sample efficiency of our proposed algorithm.
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