a Photosynthesis includes capturing sunlight by an assembly of molecules, called chlorophylls, and directing the harvested energy in the form of electronic excitations to the reaction center. Here we report, using realspace density functional theory and time-dependent density functional theory together with GW calculations, the optical and electronic properties of the two main chlorophylls in green plants, namely, chlorophylls a and b. Furthermore, we estimate the dipole and primitive quadrupole electric moments of these molecules. We employ Casida's assignment ansatz to study the absorption spectra of the chlorophylls in the two main red and blue regions at various environments with different exchangecorrelation functionals. In addition, we obtain the band gap of chlorophylls a and b, which are all in remarkable agreement with experimental observations.
Density functional theory (DFT) including van der Waals (vdW) interactions and accounting for zero-point energy (ZPE) is believed to provide a good description of crystalline ice phases [B. Pamuk et al., Phys. Rev. Lett. 108, 193003 (2012)]. Given the computational cost of DFT, it is not surprising that extensive phonon calculations, which yield the ZPE, have only been done for a limited amount of ice structures. Computationally convenient force fields on the other hand are the method of choice for large systems and/or dynamical simulations, e.g., of supercooled water. Here, we present a systematic comparison for seven hydrogen-ordered crystalline ice phases (Ih, IX, II, XIII, XIV, XV, and VIII) between many commonly used nonpolarizable force fields and density functionals, including some recently developed meta-GGA functionals and accounting for vdW interactions. Starting from the experimentally determined crystal structures, we perform space-group-constrained structural relaxations. These provide the starting point for highly accurate phonon calculations that yield effectively volume-dependent ZPEs within the quasiharmonic approximation. In particular, when including ZPE, the force fields show a remarkably good performance for equilibrium volumes and cohesive energies superior to many density functionals. A decomposition of the cohesive energies into intramolecular deformation, electrostatic, and vdW contributions quantifies the differences between force fields and DFT. Results for the equilibrium volumes and phase transition pressures for all studied force fields are much more strongly affected by ZPE than all studied density functionals. We track this down to significantly smaller shifts of the O-H-stretch modes and compare with experimental data from Raman spectroscopy.
A potential function is presented for describing a system of flexible H 2 O molecules based on the single-center multipole expansion (SCME) of the electrostatic interaction. The model, referred to as SCME/f, includes the variation of the molecular quadrupole moment as well as the dipole moment with changes in bond length and angle so as to reproduce results of high-level electronic structure calculations. The multipole expansion also includes fixed octupole and hexadecapole moments, as well as anisotropic dipole−dipole, dipole−quadrupole, and quadrupole−quadrupole polarizability tensors. The model contains five adjustable parameters related to the repulsive interaction and damping functions in the electrostatic and dispersion interactions. Their values are adjusted to reproduce the lowest energy isomers of small clusters, (H 2 O) n with n = 2−6, as well as measured properties of the ice Ih crystal. Subsequent calculations of the energy difference between the various isomer configurations of the clusters show that SCME/f gives good agreement with results of electronic structure calculations and represents a significant improvement over the previously presented rigid SCME potential function. Analysis of the vibrational frequencies of the clusters and structural properties of ice Ih crystal show the importance of accurately describing the variation of the quadrupole moment with molecular structures.
The control of electron quantum trajectories on the high-order harmonic generation of CO and N 2 molecules in the presence of a low frequency field
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