Nongradient SDEs with small white noise often arise when modeling biological and ecological time-irreversible processes. If the governing SDE were gradient, the maximum likelihood transition paths, transition rates, expected exit times, and the invariant probability distribution would be given in terms of its potential function. The quasipotential plays a similar role for nongradient SDEs. Unfortunately, the quasipotential is the solution of a functional minimization problem that can be obtained analytically only in some special cases. We propose a Dijkstra-like solver for computing the quasipotential on regular rectangular meshes in 3D. This solver results from a promotion and an upgrade of the previously introduced ordered line integral method with the midpoint quadrature rule for 2D SDEs. The key innovations that have allowed us to keep the CPU times reasonable while maintaining good accuracy are (i) a new hierarchical update strategy, (ii) the use of Karush-Kuhn-Tucker theory for rejecting unnecessary simplex updates, and (iii) pruning the number of admissible simplexes and a fast search for them. An extensive numerical study is conducted on a series of linear and nonlinear examples where the quasipotential is analytically available or can be found at transition states by other methods. In particular, the proposed solver is applied to Tao's examples where the transition states are hyperbolic periodic orbits, and to a genetic switch model by Lv et al. (2014). The C source code implementing the proposed algorithm is available at M. Cameron's web page.

A local discontinuous Galerkin (LDG) method for approximating large deformations of prestrained plates is introduced and tested on several insightful numerical examples in Bonito et al. (2022, LDG approximation of large deformations of prestrained plates. J. Comput. Phys., 448, 110719). This paper presents a numerical analysis of this LDG method, focusing on the free boundary case. The problem consists of minimizing a fourth-order bending energy subject to a nonlinear and nonconvex metric constraint. The energy is discretized using LDG and a discrete gradient flow is used for computing discrete minimizers. We first show $\varGamma $-convergence of the discrete energy to the continuous one. Then we prove that the discrete gradient flow decreases the energy at each step and computes discrete minimizers with control of the metric constraint defect. We also present a numerical scheme for initialization of the gradient flow and discuss the conditional stability of it.

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A reduced model for large deformations of prestrained plates consists of minimizing a second order bending energy subject to a nonconvex metric constraint. The former involves the second fundamental form of the middle plate and the later is a restriction on its first fundamental form. We discuss a formal derivation of this reduced model along with an equivalent formulation that makes it amenable computationally. We propose a local discontinuous Galerkin (LDG) finite element approach that hinges on the notion of reconstructed Hessian. We design discrete gradient flows to minimize the ensuing nonconvex problem and to find a suitable initial deformation. We present several insightful numerical experiments, some of practical interest, and assess various computational aspects of the approximation process.

A local discontinuous Galerkin (LDG) method for approximating large deformations of prestrained plates is introduced and tested on several insightful numerical examples in [7]. This paper presents a numerical analysis of this LDG method, focusing on the free boundary case. The problem consists of minimizing a fourth order bending energy subject to a nonlinear and nonconvex metric constraint. The energy is discretized using LDG and a discrete gradient flow is used for computing discrete minimizers. We first show Γ-convergence of the discrete energy to the continuous one. Then we prove that the discrete gradient flow decreases the energy at each step and computes discrete minimizers with control of the metric constraint defect. We also present a numerical scheme for initialization of the gradient flow, and discuss the conditional stability of it.