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Pond aquaculture is the major freshwater aquaculture method in China. Ammonia-oxidizing communities inhabiting pond sediments play an important role in controlling culture water quality. However, the distribution and activities of ammonia-oxidizing microbial communities along sediment profiles are poorly understood in this specific environment. Vertical variations in the abundance, transcription, potential ammonia oxidizing rate, and community composition of ammonia-oxidizing bacteria (AOB) and ammonia-oxidizing archaea (AOA) in sediment samples (0–50 cm depth) collected from a freshwater aquaculture pond were investigated. The concentrations of the AOA amoA gene were higher than those of the AOB by an order of magnitude, which suggested that AOA, as opposed to AOB, were the numerically predominant ammonia-oxidizing organisms in the surface sediment. This could be attributed to the fact that AOA are more resistant to low levels of dissolved oxygen. However, the concentrations of the AOB amoA mRNA were higher than those of the AOA by 2.5- to 39.9-fold in surface sediments (0–10 cm depth), which suggests that the oxidation of ammonia was mainly performed by AOB in the surface sediments, and by AOA in the deeper sediments, where only AOA could be detected. Clone libraries of AOA and AOB amoA sequences indicated that the diversity of AOA and AOB decreased with increasing depth. The AOB community consisted of two groups: the Nitrosospira and Nitrosomonas clusters, and Nitrosomonas were predominant in the freshwater pond sediment. All AOA amoA gene sequences in the 0–2 cm deep sediment were grouped into the Nitrososphaera cluster, while other AOA sequences in deeper sediments (10–15 and 20–25 cm depths) were grouped into the Nitrosopumilus cluster.

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Pond aquaculture undeniably offers the potential for food production worldwide. In China, 45.83% of aquatic production is currently from pond aquaculture. However, with the continuous expansion of this practice, environmental problems such as a high level of water consumption, aquaculture water deterioration, pollution from effluent and aquatic product quality decline seriously restrict the sustainable development of pond aquaculture. In this review, we summarise the (i) the impacts of pond aquaculture on the environment, (ii) research progress in pond aquaculture ecological engineering, (iii) existing technologies regarding pond aquaculture ecological engineering systems, (iv) effects of applying pond aquaculture ecological engineering and (v) summary and prospects. Moreover, we discuss the merits and drawbacks of each method and technology, and future research priorities are reviewed. With this, an understanding of the role played by ecological engineering in pond aquaculture is provided, as well as guidance for precisely managing aquaculture water and effluent, aquaculture practices, and technological developments. In summary, the pond aquaculture ecological engineering can be managed so as to improve animal welfare and the stability of water treatment systems, reducing the adverse effects on the environment and public health, and enabling the sustainable development of pond aquaculture.

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The effects of a portable solar water quality control machine (PSWM) on water quality and sediment of aquaculture ponds were studied in bream aquaculture ponds in Shanghai, China. PSWM operation reduced the temperature and dissolved oxygen (DO) differences between upper and lower water levels. Concentrations of NH-N, NO-N, TN, TP, COD and TSS increased rapidly and reached maximums at 12 h. The density and biomass of phytoplankton and levels of chlorophyll a reached maximums after 40 h of PSWM operation. In a 165-day study, the mean concentrations of NH-N, NO-N and the available phosphorous (AP) in the PSWM ponds were significantly lower than in the control ponds, but the TP was significantly greater than the control ponds. Compared with the test began, the thickness of the sediment in PSWM ponds declined by 12.4 ± 4.3 cm, the control ponds increased by 5.0 ± 2.3 cm and the TN and AP levels in sediment significantly declined. PSWM treatment increased the production of bream and silver carp by 30 and 25%, respectively, and the feed coefficient was reduced by 24.2%. Use of PSWM in bream aquaculture ponds improved water quality, reduced sediment, reduced aquaculture pollution emissions and increased production.