Tracing evolutionary processes that lead to fixation of genomic variation in wild bacterial populations is a prime challenge in molecular evolution. In particular, the relative contribution of Horizontal Gene Transfer (HGT) versus de novo mutations during adaptation to a new environment is poorly understood. To gain a better understanding of the dynamics of HGT and its effect on adaptation, we subjected several populations of competent Bacillus subtilis to a serial dilution evolution on a high salt containing medium, either with or without foreign DNA from diverse pre-adapted or naturally salt tolerant species. Following 504 generations of evolution, all populations improved growth yield on the medium. Sequencing of evolved populations revealed extensive acquisition of foreign DNA from close Bacillus donors but not from more remote donors. HGT occurred in bursts, whereby a single bacterial cell appears to have acquired dozens of fragments at once. In the largest burst, close to 2% of the genome has been replaced by HGT. Acquired segments tend to be clustered in integration "hot spots". Other than HGT, genomes also acquired spontaneous mutations. Many of these mutations occurred within, and seem to alter, the sequence of flagellar proteins. Finally, we show that while some HGT fragments could be neutral, others are adaptive and accelerate evolution.
The manner in which leaves adapt to different light intensities is key for enabling plants to survive in diverse environments and in constantly changing conditions. Many studies have addressed this subject, but little attention has been given to the effect that mineral deposits in leaves can have on photosynthesis.Here we study 6 species of Ficus and investigate how different cystolith configurations affect photosynthesis in both non-saturating and saturating light. We quantified the effect of light scattering by cystoliths on light absorption by measuring chlorophyll fluorescence intensity using microfluorimetry. We complement this by carbon assimilation measurements to directly estimate how light scattering by cystoliths affects the overall photosynthetic process.We show that light waste is reduced when irradiance is on a cystolith compared to cystolith free tissue. Moreover, light is channeled into the center of the leaf where photosynthesis occurs more efficiently than in the outer layers. This, in turn, leads to more efficient CO2 assimilation.We conclude that cystoliths contribute to photosynthesis optimization under saturating light. Cystoliths reduce the wasted portion of absorbed light under saturating irradiance by scattering light into the light-deprived leaf center. The increased efficiency may well provide important benefits to plants that form mineral scatterers.
In the era of genome engineering, a new study returns to classical genetics to decipher genotype-phenotype relationships in unprecedented throughput and with unprecedented accuracy. Capitalizing on natural variation in yeast strains and frequent meiotic recombination, She and Jarosz (2018) dissect and map to nucleotide resolution, simple and complex determinants of diverse phenotypic traits.
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