The advent of high-throughput phenotyping technologies has created a deluge of information that is difficult to deal with without the appropriate data management tools. These data management tools should integrate defined workflow controls for genomic-scale data acquisition and validation, data storage and retrieval, and data analysis, indexed around the genomic information of the organism of interest. To maximize the impact of these large datasets, it is critical that they are rapidly disseminated to the broader research community, allowing open access for data mining and discovery. We describe here a system that incorporates such functionalities developed around the Purdue University high-throughput ionomics phenotyping platform. The Purdue Ionomics Information Management System (PiiMS) provides integrated workflow control, data storage, and analysis to facilitate high-throughput data acquisition, along with integrated tools for data search, retrieval, and visualization for hypothesis development. PiiMS is deployed as a World Wide Web-enabled system, allowing for integration of distributed workflow processes and open access to raw data for analysis by numerous laboratories. PiiMS currently contains data on shoot concentrations of P,
Recent advances in statistical procedures, coupled with the availability of high performance computational resources and the large mass of data generated from high throughput screening, have enabled a new paradigm for building mathematical models of the kinetic behavior of catalytic reactions. A Bayesian approach is used to formulate the model building problem, estimate model parameters by Monte Carlo based methods, discriminate rival models, and design new experiments to improve the discrimination and fidelity of the parameter estimates. The methodology is illustrated with a typical, model building problem involving three proposed Langmuir−Hinshelwood rate expressions. The Bayesian approach gives improved discrimination of the three models and higher quality model parameters for the best model selected as compared to the traditional methods that employ linearized statistical tools. This paper describes the methodology and its capabilities in sufficient detail to allow kinetic model builders to evaluate and implement its improved model discrimination and parameter estimation features.
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