The development of molecular diagnostic assays with increased sensitivity compared with conventional histological techniques is highly desirable for effective management of bonamiosis in cultured oyster stocks and wild populations. A real-time TaqMan PCR assay was developed for the specific detection of Bonamia species in infected oyster tissues. The TaqMan assay was shown to be significantly more sensitive than histopathology. Although a real-time TaqMan PCR assay is comparable with conventional PCR in terms of sensitivity, it offers the advantages that it is a rapid test and has a very low risk of sample cross-contamination. Furthermore, it can be optimised to quantify the parasite load in samples. The assay detected Bonamia isolates from Australia, New Zealand, Europe, Canada, Chile and the USA and therefore demonstrated genus specificity as tested in this study. KEY WORDS: Bonamia spp. · Real-time TaqMan PCR assay · Oyster Resale or republication not permitted without written consent of the publisherDis Aquat Org 71: [75][76][77][78][79][80] 2006 known to harbour Bonamia sp., an endemic isolate that has caused mortalities in the states of Victoria, Tasmania and Western Australia (Hine 1996, CochennecLaureau et al. 2003, Diggles 2003. Other isolates of Bonamia have been reported from O. chilensis in Chile (Campalans et al. 2000), Crassostrea ariakensis in North Carolina (Burreson et al. 2004) and O. puelchana in Argentina (Kroeck & Montes 2005). Taxonomic relationships between these isolates and described species within the genus need to be established.Although recent developments of PCR-based assays have partially addressed the limitations of histology (Carnegie & Cochennec-Laureau 2004), real-time PCR (polymerase chain reaction) has the potential to provide rapid and quantitative results. In order to establish an effective diagnostic capability that will help prevent the introduction of exotic Bonamia spp. and to avoid the spread of enzootic isolates, the development of a molecular-based diagnostic assay that allows rapid, reliable and sensitive detection of Bonamia spp. is required. This report describes the development of a real-time PCR assay capable of detecting Bonamia isolates with greater sensitivity than currently available methods. MATERIALS AND METHODSIsolates of Bonamia spp. Wild flat oysters Ostrea angasi, used as a source of Bonamia sp.-infected tissue, were collected and fixed in 95% ethanol, during the course of a survey on the health and genetics of stocks in 5 estuaries on the south coast of New South Wales, Australia (Heasman et al. 2004). European flat oyster O. edulis tissues, infected with isolates of B. ostreae and fixed in 95% ethanol, were obtained from France (6 samples) and the Netherlands (2 samples). Four bluff oyster O. chilensis tissues, infected with B. exitiosa and fixed in 95% ethanol, were obtained from New Zealand. In addition, DNA prepared from Bonamia-infected oysters O. edulis (Canada and USA) and O. chilensis (Chile) was included in the study. Furthermore,...

No abstract

No abstract

No abstract

No abstract

Although a wide range of viruses have been reported in marine molluscs, most of these reports rely on ultrastructural examination and few of these viruses have been fully characterized. The lack of marine mollusc cell lines restricts virus isolation capacities and subsequent characterization works. Our current knowledge is mostly restricted to viruses affecting farmed species such as oysters Crassostrea gigas, abalone Haliotis diversicolor supertexta or the scallop Chlamys farreri. Molecular approaches which are needed to identify virus affiliation have been carried out for a small number of viruses, most of them belonging to the Herpesviridae and birnaviridae families. These last years, the use of New Generation Sequencing approach has allowed increasing the number of sequenced viral genomes and has improved our capacity to investigate the diversity of viruses infecting marine molluscs. This new information has in turn allowed designing more efficient diagnostic tools. Moreover, the development of experimental infection protocols has answered some questions regarding the pathogenesis of these viruses and their interactions with their hosts. Control and management of viral diseases in molluscs mostly involve active surveillance, implementation of effective bio security measures and development of breeding programs. However factors triggering pathogen development and the life cycle and status of the viruses outside their mollusc hosts still need further investigations.

No abstract

The recent emergence of a herpes-like virus in both farmed and wild populations of abalone in Victoria, Australia, has been associated with high mortality rates in animals of all ages. Based on viral genome sequence information, a virus-specific real-time TaqMan assay was developed for detection and identification of the abalone herpes-like virus (AbHV). The assay was shown to be specific as it did not detect other viruses from either the Herpesvirales or the Iridovirales orders which have genome sequence similarities. However, the TaqMan assay was able to detect DNA from the Taiwanese abalone herpes-like virus, suggesting a relationship between the Taiwanese and Australian viruses. In addition, the assay detected < 300 copies of recombinant plasmid DNA per reaction. Performance characteristics for the AbHV TaqMan assay were established using 1673 samples from different abalone populations in Victoria and Tasmania. The highest diagnostic sensitivity and specificity were 96.7 (95% CI: 82.7 to 99.4) and 99.7 (95% CI: 99.3 to 99.9), respectively, at a threshold cycle (C T ) value of 35.8. The results from 2 separate laboratories indicated good repeatability and reproducibility. This molecular assay has already proven useful in confirming presumptive diagnosis (based on the presence of ganglioneuritis) of diseased abalone in Victorian waters as well as being a tool for surveillance of wild abalone stocks in other parts of Australia.