Numerous studies have compared the rates of primary production using various techniques at specific locations and times. However, these comparisons are local and cannot be used to compare or scale rates of primary production using different methods across ocean basins or seasonal time scales. Here, we quantify the range in rates of primary production derived using different techniques and provide equations that allow conversions of estimates between different methods. We do so on the basis of a compilation of data on volumetric estimates of primary production rates concurrently estimated with at least two different methods. We observed that the comparison of estimates of marine phytoplankton primary production derived from different methods reveals very large variations between methods. The highest primary production estimates are derived using the 18 O method, which may provide the best and more generally applicable estimate of gross primary production (GPP). The regression equations presented in this work provide the best available approach to convert data across methods and therefore integrate and synthesize available and future data derived using different methods.

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Abstract. Changes in marine phytoplankton communities over short-time scales have rarely been examined. We sampled nearly daily, and determined taxonomic composition and abundance of the main microplanktonic groups from both net and bottle sampling during the DYNAPROC 2 cruise (September–October 2004), in the NW Mediterranean Sea. Hydrological conditions were characterised by the existence of a highly-stratified water column and nutrient-depleted conditions. In this almost steady state situation, we found a decrease in regularity, which we attribute to competitive exclusion, leading to the dominance of species with the best fitness. While overall diversity appeared to be quite invariant, important variations occured among specific taxonomic groups. For example, within the genus Ceratium, the dominance index tended to increase throughout the study from 44% to a maximum of 73% at the end of the cruise. We also discuss the value of taxonomic studies, especially in the context of global change, as able to provide valuable information on biogeochemically-important groups of species, as well as those indicative of water masses or warming, and trophic aspects of the community that are ignored or largely underestimated with other kind of phytoplankton studies, such as pigment analysis.

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The organic carbon fluxes mediated by planktonic communities in two cyclonic eddies (CEs) and two anticyclonic eddies (AEs) at the Canary Eddy Corridor were studied and compared with the dynamics in two far-field (FF) stations located outside the eddies. We observed favorable conditions and signs for upwelling at the center of CEs and for downwelling and mixing at the centers of AEs. CEs were characterized by a higher concentration of nutrients and the highest concentration of chlorophyll a (chl a), associated with the highest abundance of microphytoplankton and diatoms. AEs displayed concentrations of chl a values and nutrients similar to those at the FF stations, except for the highest ammonium concentration occurring at AE and a very low concentration of phosphorus at FF stations. AEs were transient systems characterized by an increasing abundance of picophytoplankton and heterotrophic bacteria. While primary production was similar between the systems, the production of dissolved organic carbon (P_DOC) was significantly higher in the AEs. Phytoplankton cell mortality was lowest in the CEs, and we found higher cell mortality rates at AE than at FF stations, despite similar chl a concentration. Environmental changes in the AEs have been significantly prejudicial to phytoplankton as indicated by higher phytoplankton cell mortality (60% of diatoms cells were dead) and higher cell lysis rates. The adverse conditions for phytoplankton associated with the early-stage anticyclonic systems, mainly triggered by active downwelling, resulted in higher cell mortality, forcing photosynthesized carbon to fuel the dissolved pool

Functional genomics of diatom-dominated communities from the Antarctic Peninsula was studied using comparative metatranscriptomics. Samples obtained from diatom-rich communities in the Bransfield Strait, the western Weddell Sea and sea ice in the Bellingshausen Sea/Wilkins Ice Shelf yielded more than 500K pyrosequencing reads that were combined to produce a global metatranscriptome assembly. Multi-gene phylogenies recovered three distinct communities, and diatom-assigned contigs further indicated little read-sharing between communities, validating an assembly-based annotation and analysis approach. Although functional analysis recovered a core of abundant shared annotations that were expressed across the three diatom communities, over 40% of annotations (but accounting for o10% of sequences) were community-specific. The two pelagic communities differed in their expression of N-metabolism and acquisition genes, which was almost absent in post-bloom conditions in the Weddell Sea community, while enrichment of transporters for ammonia and urea in Bransfield Strait diatoms suggests a physiological stance towards acquisition of reduced N-sources. The depletion of carbohydrate and energy metabolism pathways in sea ice relative to pelagic communities, together with increased light energy dissipation (via LHCSR proteins), photorespiration, and NO 3 − uptake and utilization all pointed to irradiance stress and/or inorganic carbon limitation within sea ice. Ice-binding proteins and cold-shock transcription factors were also enriched in sea ice diatoms. Surprisingly, the abundance of gene transcripts for the translational machinery tracked decreasing environmental temperature across only a 4°C range, possibly reflecting constraints on translational efficiency and protein production in cold environments.

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The role of krill as a source of dissolved organic matter in the Southern Ocean was tested through a series of experiments performed around the Antarctic Peninsula. These experiments revealed high but variable release rates of dissolved material (carbon and nutrients), supplying, on average, 150 mmol dissolved organic carbon (DOC) m 22 d 21 , which is comparable with that supported by phytoplankton. Krill support, on average, 73% of the combined krill + phytoplankton production of DOC in the ecosystem, implying the importance of krill in conditioning the productivity of the Southern Ocean. However, the contribution of krill as a source of DOC varied greatly because of the patchy distribution of both krill and primary producers in the region, ranging from 98% to 10% of the combined (krill + phytoplankton) DOC release rates. These results suggest that rapid decline in krill standing stocks associated with reduced ice cover may have major consequences for microbial communities in the ecosystem, since bacterial carbon demand often exceeds the DOC supplied by phytoplankton in coastal areas of the Southern Ocean, with potential unforeseen consequences in the carbon balance of the Southern Ocean.