More than two years on, the COVID-19 pandemic continues to wreak havoc around the world and has battle-tested the pandemic-situation responses of all major global governments. Two key areas of investigation that are still unclear are: the molecular mechanisms that lead to heterogenic patient outcomes, and the causes of Post COVID condition (AKA Long-COVID). In this paper, we introduce the HYGIEIA project, designed to respond to the enormous challenges of the COVID-19 pandemic through a multi-omic approach supported by network medicine. It is hoped that in addition to investigating COVID-19, the logistics deployed within this project will be applicable to other infectious agents, pandemic-type situations, and also other complex, non-infectious diseases. Here, we first look at previous research into COVID-19 in the context of the proteome, metabolome, transcriptome, microbiome, host genome, and viral genome. We then discuss a proposed methodology for a large-scale multi-omic longitudinal study to investigate the aforementioned biological strata through high-throughput sequencing (HTS) and mass-spectrometry (MS) technologies. Lastly, we discuss how a network medicine approach can be used to analyze the data and make meaningful discoveries, with the final aim being the translation of these discoveries into the clinics to improve patient care.
Deep learning models for radiology are typically deployed either through cloud-based platforms, through on-premises infrastructures, or though heavyweight viewers. This tends to restrict the audience of deep learning models to radiologists working in state-of-the-art hospitals, which raises concerns about the democratization of deep learning for medical imaging, most notably in the context of research and education. We show that complex deep learning models can be applied directly inside Web browsers, without resorting to any external computation infrastructure, and we release our code as free and open-source software. This opens the path to the use of teleradiology solutions as an effective way to distribute, teach, and evaluate deep learning architectures.
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