We present findings regarding the state of the field of Algorithm Visualization (AV) based on our analysis of a collection of over 500 AVs. We examine how AVs are distributed among topics, who created them and when, their overall quality, and how they are disseminated. There does exist a cadre of good AVs and active developers. Unfortunately, we found that many AVs are of low quality, and coverage is skewed toward a few easier topics. This can make it hard for instructors to locate what they need. There are no effective repositories of AVs currently available, which puts many AVs at risk for being lost to the community over time. Thus, the field appears in need of improvement in disseminating materials, propagating known best practices, and informing developers about topic coverage. These concerns could be mitigated by building community and improving communication among AV users and developers.
Abstract-Temporal data mining algorithms are becoming increasingly important in many application domains including computational neuroscience, especially the analysis of spike train data. While application scientists have been able to readily gather multi-neuronal datasets, analysis capabilities have lagged behind, due to both lack of powerful algorithms and inaccessibility to powerful hardware platforms. The advent of GPU architectures such as Nvidia's GTX 280 offers a costeffective option to bring these capabilities to the neuroscientist's desktop. Rather than port existing algorithms onto this architecture, we advocate the need for algorithm transformation, i.e., rethinking the design of the algorithm in a way that need not necessarily mirror its serial implementation strictly. We present a novel implementation of a frequent episode discovery algorithm by revisiting "in-the-large" issues such as problem decomposition as well as "in-the-small" issues such as data layouts and memory access patterns. This is non-trivial because frequent episode discovery does not lend itself to GPU-friendly data-parallel mapping strategies. Applications to many datasets and comparisons to CPU as well as prior GPU implementations showcase the advantages of our approach.
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