Activation of the transcription factor NF-B is regulated by the phosphorylation and subsequent degradation of its inhibitory subunit, IB. A large multiprotein complex, the IB kinase (IKK), catalyzes the phosphorylation of IB. The two kinase components of the IKK complex, IKK␣ and IKK, were overexpressed in insect cells and purified to homogeneity. Both purified IKK␣ and IKK specifically catalyzed the phosphorylation of the regulatory serine residues of IB␣. Hence, IKK␣ and IKK were functional catalytic subunits of the IKK complex. Purified IKK␣ and IKK also preferentially phosphorylated serine as opposed to threonine residues of IB␣, consistent with the substrate preference of the IKK complex. Kinetic analysis of purified IKK␣ and IKK revealed that the kinase activity of IKK on IB␣ is 50 -60-fold higher than that of IKK␣. The primary difference between the two activities is the K m for IB␣. The kinetics of both IKK␣ and IKK followed a sequential Bi Bi mechanism. No synergistic effects on IB␣ phosphorylation were detected between IKK␣ and IKK. Thus, in vitro, IKK␣ and IKK are two independent kinases of IB␣.The transcription factor NF-B plays a critical role in immune and inflammatory responses. It is regulated by the signaling of receptors for inflammatory cytokines such as TNF-␣, 1 IL-1, or other external stimuli (1). In resting cells, NF-B is sequestered in the cytoplasm through its association with inhibitory proteins termed IB. Two IB proteins, IB␣ and IB, are rapidly phosphorylated at Ser residues in the Nterminal region upon stimulation by TNF-␣ and IL-1. The regulated phosphorylation is at Ser-32 and Ser-36 of IB␣ and, correspondingly, Ser-19 and Ser-23 of IB (2, 3). The more recently cloned IB isoform, IB⑀, also contains the two conserved Ser residues at the N terminus for signal-induced degradation (4). Phosphorylated IB␣ and IB are subsequently ubiquitinated and undergo ubiquitin-dependent degradation by the 26 S proteasome (3, 5). Degradation of IB results in the release of NF-B, which then translocates to the nucleus, where it up-regulates the transcription of its target genes (1).A 500 -900-kDa protein complex that contains the TNF-␣-induced IB kinase (IKK) has been purified and characterized independently by two groups (6, 7). The IKK complex phosphorylates IB␣ at the specific Ser residues that target the protein for ubiquitination and degradation. Two kinase subunits of the IKK complex, denoted IKK␣ and IKK, have been cloned (6 -10). IKK␣ or IKK overexpressed in mammalian cells specifically phosphorylates IB␣ and IB after immunoprecipitation, and their kinase activities can be induced by TNF-␣ or IL-1 (6 -10). In HeLa cells, expression of antisense IKK␣ inhibited NF-B activation by TNF-␣ or IL-1 (6). Furthermore, overexpression of dominant-negative mutants of either IKK␣ or IKK blocked TNF-␣/IL-1-induced NF-B activation (8, 10). Thus, both IKK␣ and IKK contribute to the activity of the IKK complex and are involved in NF-B activation. An additional protein kinase, NF-B-inducing kina...