Leaf pigments provide valuable information about plant physiology. High resolution monitoring of their dynamics will give access to better understanding of processes occurring at different scales, and will be particularly important for ecologists, farmers, and decision makers to assess the influence of climate change on plant functions, and the adaptation of forest, crop, and other plant canopies. In this article, we present a new version of the widely-used PROSPECT model, hereafter named PROSPECT-D for dynamic, which adds anthocyanins to chlorophylls and carotenoids, the two plant pigments in the current version. We describe the evolution and improvements of PROSPECT-D compared to the previous versions, and perform a validation on various experimental datasets. Our results show that PROSPECT-D outperforms all the previous versions. Model prediction uncertainty is decreased and photosynthetic pigments are better retrieved. This is particularly the case for leaf carotenoids, the estimation of which is particularly challenging. PROSPECT-D is also able to simulate realistic leaf optical properties with minimal error in the visible domain, and similar performances to other versions in the near infrared and shortwave infrared domains.

Automated detection and identification of weeds in crop fields is the greatest obstacle to development of practical site-specific weed management systems. Research progress is summarized for two different approaches to the problem, remote sensing weed mapping and ground-based detection using digital cameras or nonimaging sensors. The general spectral and spatial limitations reported for each type of weed identification system are reviewed. Airborne remote sensing has been successful for detection of distinct weed patches when the patches are dense and uniform and have unique spectral characteristics. Identification of weeds is hampered by spectral mixing in the relatively large pixels (typically larger than 1 by 1 m) and will not be possible from imagery where weed seedlings are sparsely distributed among crop plants. The use of multispectral imaging sensors such as color digital cameras on a ground-based mobile platform shows more promise for weed identification in field crops. Spectral features plus spatial features such as leaf shape and texture and plant organization may be extracted from these images. However, there is a need for research in areas such as artificial lighting, spectral band requirements, image processing, multiple spatial resolution systems, and multiperspective images.

Background: Quantitative and qualitative assessment of visual and morphological traits of seed is slow and imprecise with potential for bias to be introduced when gathered with handheld tools. Colour, size and shape traits can be acquired from properly calibrated seed images. New automated tools were requested to improve data acquisition efficacy with an emphasis on developing research workflows.Results: A portable imaging system (BELT) supported by image acquisition and analysis software (phenoSEED) was created for small-seed optical analysis. Lentil (Lens culinaris L.) phenotyping was used as the primary test case. Seeds were loaded into the system and all seeds in a sample were automatically individually imaged to acquire top and side views as they passed through an imaging chamber. A Python analysis script applied a colour calibration and extracted quantifiable traits of seed colour, size and shape. Extraction of lentil seed coat patterning was implemented to further describe the seed coat. The use of this device was forecasted to eliminate operator biases, increase the rate of acquisition of traits, and capture qualitative information about traits that have been historically analyzed by eye. Conclusions:Increased precision and higher rates of data acquisition compared to traditional techniques will help to extract larger datasets and explore more research questions. The system presented is available as an open-source project for academic and non-commercial use.

, "Fully automated laboratory and field-portable goniometer used for performing accurate and precise multiangular reflectance measurements," Abstract. Field-portable goniometers are created for a wide variety of applications. Many of these applications require specific types of instruments and measurement schemes and must operate in challenging environments. Therefore, designs are based on the requirements that are specific to the application. We present a field-portable goniometer that was designed for measuring the hemispherical-conical reflectance factor (HCRF) of various soils and low-growing vegetation in austere coastal and desert environments and biconical reflectance factors in laboratory settings. Unlike some goniometers, this system features a requirement for "target-plane tracking" to ensure that measurements can be collected on sloped surfaces, without compromising angular accuracy. The system also features a second upward-looking spectrometer to measure the spatially dependent incoming illumination, an integrated software package to provide full automation, an automated leveling system to ensure a standard frame of reference, a design that minimizes the obscuration due to self-shading to measure the opposition effect, and the ability to record a digital elevation model of the target region. This fully automated and highly mobile system obtains accurate and precise measurements of HCRF in a wide variety of terrain and in less time than most other systems while not sacrificing consistency or repeatability in laboratory environments.

Background Stalk lodging (breaking of agricultural plant stalks prior to harvest) is a multi-billion dollar a year problem. Stalk lodging occurs when bending moments induced by a combination of external loading (e.g. wind) and self-loading (e.g. the plant’s own weight) exceed the stalk bending strength of plant stems. Previous studies have investigated external loading and self-loading of plants as separate and independent phenomena. However, these two types of loading are highly interconnected and mutually dependent. The purpose of this paper is twofold: (1) to investigate the combined effect of external loads and plant weight on the flexural response of plant stems, and (2) to provide a generalized framework for accounting for self-weight during mechanical phenotyping experiments used to predict stalk lodging resistance. Results A mathematical methodology for properly accounting for the interconnected relationship between self-loading and external loading of plants stems is presented. The method was compared to numerous finite element models of plants stems and found to be highly accurate. The resulting interconnected set of equations from the derivation were used to produce user-friendly applications by presenting (1) simplified self-loading correction factors for common loading configurations of plants, and (2) a generalized Microsoft Excel framework that calculates the influence of self-loading on crop stems. Results indicate that ignoring the effects of self-loading when calculating stalk flexural stiffness is appropriate for large and stiff plants such as maize, bamboo, and sorghum. However, significant errors result when ignoring the effects of self-loading in smaller plants with larger relative grain sizes, such as rice (8% error) and wheat (16% error). Conclusions Properly accounting for self-weight can be critical to determining the structural response of plant stems. Equations and tools provided herein enable researchers to properly account for the plant’s weight during mechanical phenotyping experiments used to determine stalk lodging resistance.