Complex formation of poly(ethylene glycol)-poly(L-lysine) (PEG-PLL) AB type block copolymer with salmon testes DNA or Col E1 plasmid DNA in aqueous milieu was studied. The PLL segment of PEG-PLL interacts with nucleic acid through an electrostatic force to form a water-soluble complex associate with a diameter of ca. 50 nm. PEG segments surrounding the core of the polyion complex prevented the complex from precipitation even under stoichiometric conditions, at which the unit ratio of L-lysine in PEG-PLL and phosphate in the DNA is equal. The profile of the thermal melting curve revealed a higher stabilization of DNA structure in PEG-PLL/DNA complexes compared to that in the complex made from DNA and PLL homopolymer with the same molecular weight as the PLL segment in PEG-PLL. This stabilizing effect on the DNA structure may be due to the compartmentalization of DNA into the microenvironment of PEG with low permittivity. The reversible nature of the PEG-PLL/DNA complex was further verified through the addition of polyanion [poly-(L-aspartic acid)]: Poly(L-aspartic acid) replaced DNA in the complex with PEG-PLL, resulting in the release of free DNA in the medium. Furthermore, the PEG-PLL/DNA complex showed high resistance against DNase I attack, suggesting DNA protection through the segregation into the core of the associate having PEG palisade.

No abstract

Supramolecular associates of DNA with Poly(ethylene glycol)-poly(L-lysine) block copolymers (PEG-PLL) were prepared in aqueous milieu, and the water solubility under charge-neutralized (stoichiometric) conditions was maintained. Associates thus prepared achieved remarkable resistance against nuclease attack, probably due to the formation of PEG palisade surrounding the ion-complexed core of the DNA with the PLL segment of the block copolymer. Further, to estimate the stability of the associate, the rate of interexchange reaction of DNA in the associate with poly(vinyl sulfonate) was evaluated from a method using a metachromasy of toluidine blue dye. Of interest, the nuclease resistance of DNA in PEG-PLL/DNA associate had an inverse correlation with the rate of interexchange reaction and, thus, progressively increased with an increase in the molecular weight of PLL segment in the block copolymer, indicating the substantial importance of block copolymer design for DNA stabilization.

Hepatocyte nuclear factor-4α (HNF4α, NR2A1) is a nuclear receptor that has a critical role in hepatocyte differentiation and the maintenance of homeostasis in the adult liver. However, a detailed understanding of native HNF4α in the steady-state remains to be elucidated. Here we report the native HNF4α isoform, phosphorylation status, and complexes in the steady-state, as shown by shotgun proteomics in HepG2 hepatocarcinoma cells. Shotgun proteomic analysis revealed the complexity of native HNF4α, including multiple phosphorylation sites and inter-isoform heterodimerization. The associating complexes identified by label-free semiquantitative proteomic analysis include the following: the DNA-dependent protein kinase catalytic subunit, histone acetyltransferase complexes, mRNA splicing complex, other nuclear receptor coactivator complexes, the chromatin remodeling complex, and the nucleosome remodeling and histone deacetylation complex. Among the associating proteins, GRB10 interacting GYF protein 2 (GIGYF2, PERQ2) is a new candidate cofactor in metabolic regulation. Moreover, an unexpected heterodimerization of HNF4α and hepatocyte nuclear factor-4γ was found. A biochemical and genomewide analysis of transcriptional regulation showed that this heterodimerization activates gene transcription. The genes thus transcribed include the cell death-inducing DEF45-like effector b (CIDEB) gene, which is an important regulator of lipid metabolism in the liver. This suggests that the analysis of the distinctive stoichiometric balance of native HNF4α and its cofactor complexes described here are important for an accurate understanding of transcriptional regulation.

Split into seven sizes: Highly ordered cleavage of supercoiled plasmid DNA by S1 nuclease was accomplished through DNA complexation with water‐soluble cationic block copolymers (see schematic representation). The results provide insights into the mechanisms of endogenous protein‐induced modification of DNA and into the design of artificial restriction enzymes through the supramolecular assembly of synthetic macromolecules.