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Pleistocene climate changes have imposed extreme conditions to intertidal rocky marine communities, forcing many species to significant range shifts in their geographical distributions. Phylogeographic analyses based on both mitochondrial and nuclear genetic markers provide a useful approach to unravel phylogeographic patterns and processes of species after this time period, to gain general knowledge of how climatic changes affect shifts in species distributions. We analyzed these patterns on the corkwing wrasse (Symphodus melops, Labridae), a rocky shore species inhabiting North Sea waters and temperate northeastern Atlantic Ocean from Norway to Morocco including the Azores, using a fragment of the mitochondrial control region and the first intron of the nuclear S7 ribosomal protein gene. We found that S. melops shows a clear differentiation between the Atlantic and the Scandinavian populations and a sharp contrast in the genetic diversity, high in the south and low in the north. Within each of these main geographic areas there is little or no genetic differentiation. The species may have persisted throughout the last glacial maximum in the southern areas as paleotemperatures were not lower than they are today in North Scandinavia. The North Sea recolonization most likely took place during the current interglacial and is dominated by a haplotype absent from the south of the study area, but present in Plymouth and Belfast. The possibility of a glacial refugium in or near the English Channel is discussed.

Keywords:European marine fish Evolutionary history Patterns of genetic diversity in the NE Atlantic Population genetics Rock intertidalThe study of the phylogeography of inshore fish from West Europe is revealing diverse geographical and demographical patterns. Some species conform to the phylogeographic patterns typical of terrestrial organisms, with marked signatures of the last glaciation and a decline of genetic diversity to the north of the species range. Other species, however, reveal no decline in diversity with latitude and signatures of expansions older than the last glaciation. The shanny Lipophrys pholis is a common intertidal resident fish in west European rocky shores. It is unable to leave the rocky stretch where it settled as a juvenile, so that dispersal depends entirely on the planktonic larval stage. These life-history and behavioural traits make the shanny an interesting species for phylogeographical analysis, as long-range movements by adults, which could blur historical signals, are absent. In this paper the phylogeography of L. pholis was studied using a fragment of the mitochondrial control region and one from the first intron of the S7 ribosomal protein gene. The European samples (ranging from SW Spain to the Netherlands) did not display population differentiation, isolation-by-distance or latitudinal declines in genetic diversity. Iberia was proposed as having operated as the main glacial refugium for the shanny. The genealogy of the European population showed that the largest expansion detected was older than the last glaciation, with lineages persisting from the early Pleistocene, which does not conform to colonisation by a few founders in the current interglacial. It is argued that if fishes have very large population sizes and high dispersal rates, populations can efficiently track climatic shifts so that little or no genetic structure remains after each range expansion and latitudinal gradients of genetic diversity tend to be weak or non-existent.

A fragment of the mitochondrial control region was used to assess phylogeographic patterns and historical demography of the sand-smelt Atherina presbyter in the North-eastern Atlantic, covering its geographical range. A striking result is the highly marked diVerentiation between the Canary Islands population and western European ones. A genetic structure among European populations of A. presbyter was revealed, with a pattern of isolation-by-distance or a gradient eVect at a scale of hundreds kilometres, an uncommon pattern likely related to the biological and life-history traits of the sand-smelt. The northern European populations present a much lower genetic diversity when compared to southern populations, which is consistent with a recent colonization from southern populations. The results showed signs of Pleistocene signatures, with the population age estimates for the European populations being clearly older than the Last Glacial Maximum (18,000 years bp). Nevertheless, paleotemperature reconstructions show that the sand-smelt could not have inhabited the western European shores during the last glacial phase.

The distribution and demographic patterns of marine organisms in the north Atlantic were largely shaped by climatic changes during the Pleistocene, when recurrent glacial maxima forced them to move south or to survive in northern peri-glacial refugia. These patterns were also influenced by biological and ecological factors intrinsic to each species, namely their dispersion ability. The ballan wrasse (Labrus bergylta), the largest labrid fish along Europe's continental margins, is a target for fisheries and aquaculture industry. The phylogeographic pattern, population structure, potential glacial refugia and recolonization routes for this species were assessed across its full distribution range, using mitochondrial and nuclear markers. The existence of a marked population structure can reflect both recolonization from three distinct glacial refugia and current and past oceanographic circulation patterns. Although isolated in present times, shared haplotypes between continental and Azores populations and historical exchange of migrants in both directions point to a common origin of L. bergylta. This situation is likely to be maintained and/or accentuated by current circulation patterns in the north Atlantic, and may lead to incipient speciation in the already distinct Azorean population. Future monitoring of this species is crucial to evaluate how this species is coping with current environmental changes.

In this paper, we compare the genetic structure and the historical demography of two populations of the sand smelt Atherina boyeri from the rivers Tagus and Mondego (Portugal) with two groups of samples of the closely related marine Atherina presbyter collected on the shore at comparable latitudes. A. presbyter is a pelagic marine inshore fish, while A. boyeri is typically found in coastal lagoons, estuaries and freshwaters bodies. Analysis of mtDNA control region sequences showed that the marine A. presbyter did not display signs of genetic differentiation between sites some hundreds of kilometers apart. On the contrary, A. boyeri showed clear differences between populations. The populations of A. boyeri showed a much lower genetic diversity and younger coalescence times when compared with A. presbyter. We suggest that these differences reflect the interplay between differences in ecology between the two species and the historical impact of the glaciations. While A. presbyter likely moved to the south evading the cold periods, A. boyeri probably went extinct and its populations in Western Europe are recent recolonizations from western Mediterranean refugia.