Grafting is increasingly becoming an indispensable tool that minimizes the risks associated with intensive vegetable production systems, including soil-borne diseases. This study assesses the performance of two cherry tomato hybrids (‘Cheramy’ and ‘Sheeja’) grafted onto three tomato and five eggplant local rootstock genotypes (cultivated/wild) under Ralstonia solanacearum (bacterial wilt)-infested greenhouse soil. The impact of grafting on growth, yield and fruit physical quality was mainly influenced by the response of rootstocks to disease resistance. The non-grafted plants of both the cultivars were severely affected by bacterial wilt, thus presenting high susceptibility to disease. Eggplant rootstocks imparted moderate to high resistance against bacterial wilt in both the scions, while tomato (cultivated or wild) rootstocks did not improve disease resistance, except ‘Anagha’, which provided resistance to scion cv. ‘Cheramy’. In general, scion cv. ‘Cheramy’, grafted or non-grafted, showed superior growth, yield and fruit quality compared to ‘Sheeja’. The most productive graft combinations for both the cultivars involved resistant rootstocks, i.e., ‘Sheeja’ onto eggplant rootstock ‘Surya’, and ‘Cheramy’ onto tomato rootstock ‘Anagha’. Fruit quality attributes such as ascorbic acid and lycopene contents were considerably higher, and the total soluble solids (TSS) content was considerably lower in scion cv. ‘Cheramy’, whether grafted or non-grafted, than those involving scion cv. ‘Sheeja’. The grafting effect on fruit chemical quality attributes was not promising, except grafting ‘Sheeja’ onto ‘Sopim’ for TSS, ‘Sheeja’ onto ‘Sotor’ for lycopene and ‘Cheramy’ onto ‘Ponny’ for total phenols, though no clear connection with disease incidence was in these grafts. Conclusively, eggplant rootstock imparted wilt resistance, while both eggplant and tomato rootstock grafting was beneficial to both scion cultivars in boosting the overall production and economic gains, especially for ‘Cheramy’ grafted onto ‘Anagha’ rootstock under bacterial wilt infested soil of greenhouse.