As biological imaging datasets increase in size, deep neural networks are considered vital tools for efficient image segmentation. While a number of different network architectures have been developed for segmenting even the most challenging biological images, community access is still limited by the difficulty of setting up complex computational environments and processing pipelines, and the availability of compute resources. Here, we address these bottlenecks, providing a ready-to-use image segmentation solution for any lab, with a pre-configured, publicly available, cloud-based deep convolutional neural network on Amazon Web Services (AWS). We provide simple instructions for training and applying CDeep3M for segmentation of large and complex 2D and 3D microscopy datasets of diverse biomedical imaging modalities.
A complex event can be recognized by observing necessary evidences. In the real world scenarios, this is a difficult task because the evidences can happen anywhere in a video. A straightforward solution is to decompose the video into several segments and search for the evidences in each segment. This approach is based on the assumption that segment annotation can be assigned from its video label. However, this is a weak assumption because the importance of each segment is not considered. On the other hand, the importance of a segment to an event can be obtained by matching its detected concepts against the evidential description of that event. Leveraging this prior knowledge, we propose a new method, Event-driven Multiple Instance Learning (EDMIL), to learn the key evidences for event detection. We treat each segment as an instance and quantize the instance-event similarity into different levels of relatedness. Then the instance label is learned by jointly optimizing the instance classifier and its related level. The significant performance improvement on the TRECVID Multimedia Event Detection (MED) 2012 dataset proves the effectiveness of our approach.
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