In this paper, we present a novel framework for the coupled hidden Markov model (CHMM), based on the forward and backward recursions and conditional probabilities, given a multidimensional observation. In the proposed framework, the interdependencies of states networks are modeled with Markovian-like transition laws that influence the evolution of hidden states in all channels. Moreover, an offline inference approach by maximum likelihood estimation is proposed for the learning procedure of model parameters. To evaluate its performance, we first apply the CHMM model to classify and detect disturbances using synthetic data generated by the FitzHugh-Nagumo model. The average sensitivity and specificity of the classification are above 93.98% and 95.38% and those of the detection reach 94.49% and 99.34%, respectively. The method is also evaluated using a clinical database composed of annotated physiological signal recordings of neonates suffering from apnea-bradycardia. Different combinations of beat-to-beat features extracted from electrocardiographic signals constitute the multidimensional observations for which the proposed CHMM model is applied, to detect each apnea bradycardia episode. The proposed approach is finally compared to other previously proposed HMM-based detection methods. Our CHMM provides the best performance on this clinical database, presenting an average sensitivity of 95.74% and specificity of 91.88% while it reduces the detection delay by -0.59 s.
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Purpose
: Deep learning has achieved major breakthroughs during the past decade in almost every field. There are plenty of publicly available algorithms, each designed to address a different task of computer vision in general. However, most of these algorithms cannot be directly applied to images in the medical domain. Herein, we are focused on the required preprocessing steps that should be applied to medical images prior to deep neural networks.
Approach:
To be able to employ the publicly available algorithms for clinical purposes, we must make a meaningful pixel/voxel representation from medical images which facilitates the learning process. Based on the ultimate goal expected from an algorithm (classification, detection, or segmentation), one may infer the required pre-processing steps that can ideally improve the performance of that algorithm. Required pre-processing steps for computed tomography (CT) and magnetic resonance (MR) images in their correct order are discussed in detail. We further supported our discussion by relevant experiments to investigate the efficiency of the listed preprocessing steps.
Results:
Our experiments confirmed how using appropriate image pre-processing in the right order can improve the performance of deep neural networks in terms of better classification and segmentation.
Conclusions:
This work investigates the appropriate pre-processing steps for CT and MR images of prostate cancer patients, supported by several experiments that can be useful for educating those new to the field
(https://github.com/NIH-MIP/Radiology_Image_Preprocessing_for_Deep_Learning
).
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