Lack of data on population sizes and resource requirements are major impediments to the effective conservation of rare species globally. The conservation of the Eurasian otter (Lutra lutra) in Hong Kong reflects many of these key challenges for elusive and difficult‐to‐study mammals. It is a rare carnivore that has narrowly escaped extirpation, now surviving within a human‐dominated environment. Using sign surveys and spraint analysis, we recorded only 40 fresh spraints from 246 otter signs locations, over 4 months of intensive sampling across 2 years. Records were restricted to the Mai Po wetlands, confirming this as the core area for Hong Kong's otter population. Molecular analysis and microsatellite genotyping identified a minimum of seven individuals, two pairs of which were likely related. The genetic and sign data together strongly indicate a small population. Fish dominated the otter diet, highlighting the importance of fishpond habitats as a premium foraging resource. Given the rapid changes surrounding the Mai Po area (especially the new Northern Metropolis Development Strategy), maintaining quality and connected habitats, in addition to sustaining commercial fishponds will be key to otter recovery and long‐term population viability in Hong Kong.
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