Root-knot nematode (Meloidogyne javanica) management should be partly based on the knowledge of the threshold density, and this value is likely to vary depending on the resistance level of the tomato cultivars. The damage functions based on four initial population densities (Pi) (0, 1,000, 3,000 and 5,000 egg kg-1 of soil) of root-knot nematode were determined in four tomato cultivars. The experiment was performed in completely randomized design with four replications. The results showed that yield responses to Pi were fitted properly by a log-logistic function with three parameters. The most susceptible cultivar was ‘Rutgers’ based on EP50 and EP10 (effective population of nematodes, reducing 50% or 10% of maximum yield or shoot fresh weight respectively) and three others were relatively resistant. EP10 is more applicable than EP50 because 50% yield reduction is unacceptable in most situations. EP10 for yield of ‘Rutgers’, ‘Efialto’, ‘Falat 111’, ‘Gina VF’ was 500, 3,021, 2,998, and 3,000 egg kg-1 of soil, respectively. The correlation coefficients among gall index, egg mass and reproductive factors were positively related. Reproduction factor and root gall indices were greater in ‘Rutgers’ than in the other cultivars (P≤0.05). For ‘Gina VF’ as a relatively resistant cultivar it seemed that increasing of Pi up to 5,000 or more egg kg-1 soil might break its resistance
beta-Thalassemia is mainly caused by mutations involving single base substitution and small deletions. However, a considerable number of carriers are suspected to have large deletions in beta-globin gene cluster. Common strategy for identifying deletions with definite breakpoints is based on Gap PCR. There are, however, some cases with indefinite breakpoints which usually cannot be detected by this method. We developed and optimized a quantitative real-time PCR assay for copy number analysis of beta-globin gene cluster. The copy number of target fragments (i.e. beta, delta or (G)gamma-globin genes) was determined using comparative threshold cycle method. In addition, gene dosage was analyzed using multiplex ligation-dependent probe amplification (MLPA) method in all suspected carriers. Using these relative quantitative assays, normal or carrier statuses of all 26 unknown samples were successfully determined according to the ranges obtained from the ratios of normal and definite carrier samples. Interestingly, large deletions involving the entire beta-globin gene cluster were observed in six carrier individuals. This study showed that the MLPA as a preliminary screening test can be followed by SYBR Green real-time PCR for analysis of copy number variations in beta-globin gene cluster. Combination of these relative quantitative PCR methods could be an appropriate approach for accurate diagnosis of unknown beta-thalassemia deletions in routine diagnosis of beta-thalassemia mutations.
Weed Hosts of Root-Knot Nematodes in Tomato Fields Root-knot nematodes (Meloidogyne spp.) are one of the three most economically damaging genera of plant parasitic nematodes on horticultural and field crops. Root-knot nematodes are distributed worldwide, and are obligate parasites of the roots of thousands of plant species. All major field crops, vegetable crops, turf, ornamentals, legumes and weeds are susceptible to one or more of the root-knot species. In this study, nineteen weed species were found to be hosts for Meloidogyne incognita, M. javanica, M. arenaria race 2, and M. hapla in tomato fields in Khorasan Province, Iran. Egg mass production and galling differed (p < 0.05) among these weed species: Amaranthus blitoides, Portulaca oleracea, Polygonum aviculare, Convolvulus arvensis, Cyperus rotundus, Plantago lanceolatum, Rumex acetosa, Solanum nigrum, Datura stramonium, Acroptilon repens, Alcea rosa, Alhaji camelorum, Chenopodium album, Echinochla crusgalli, Hibiscus trionum, Kochia scoparia, Malva rotundifolia, Setaria viridis, Lactuca serriola. The species P. oleracea, A. blioides, S. nigrum, P. lanceolatum, Ch. album, and C. arvensis are major threats to the natural ecosystem in the Iranian province of Khorasan. A. blitoides collected from tomato fields was a good host for 4 Meloidogyne species. C. arvensis, as an important weed, was a distinguished appropriate host for M. hapla, M. incognita, M. javanica. S. nigrum and Ch. album were good hosts for M. hapla, M. javanica, M. incognita race 1, and M. arenaria race 3. In this survey, we reported E. crusgalli as a new host of M. javanica and C. rotundus was a good host for M. arenaria and M. incognita. S. nigrum was also reported as a new host of M. hapla. R. acetosella was reported as a host of M. arenaria. M. incognita was recently described as a new species infecting D. stramonium worldwide.
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