The RNA-binding protein IGF2BP1 (IGF-II mRNA binding protein 1) stabilizes the c-myc RNA by associating with the Coding Region instability Determinant (CRD). If and how other proteins cooperate with IGF2BP1 in promoting stabilization of the cmyc mRNA via the CRD remained elusive. Here, we identify various RNA-binding proteins that associate with IGF2BP1 in an RNA-dependent fashion. Four of these proteins (HNRNPU, SYNCRIP, YBX1, and DHX9) were essential to ensure stabilization of the c-myc mRNA via the CRD. These factors associate with IGF2BP1 in a CRD-dependent manner, co-distribute with IGF2BP1 in non-polysomal fractions comprising c-myc mRNA, and colocalize with IGF2BP1 in the cytoplasm. A selective shift of relative c-myc mRNA levels to the polysomal fraction is observed upon IGF2BP1 knockdown. These findings suggest that IGF2BP1 in complex with at least four proteins promotes CRD-mediated mRNA stabilization. Complex formation at the CRD presumably limits the transfer of c-myc mRNA to the polysomal fraction and subsequent translation-coupled decay.

Prokaryotic Argonaute proteins acquire guide strands derived from invading or mobile genetic elements, via an unknown pathway, to direct guide-dependent cleavage of foreign DNA. Here, we report that Argonaute from the archaeal organism Methanocaldococcus jannaschii (MjAgo) possesses two modes of action: the canonical guide-dependent endonuclease activity and a non-guided DNA endonuclease activity. The latter allows MjAgo to process long double-stranded DNAs, including circular plasmid DNAs and genomic DNAs. Degradation of substrates in a guide-independent fashion primes MjAgo for subsequent rounds of DNA cleavage. Chromatinized genomic DNA is resistant to MjAgo degradation, and recombinant histones protect DNA from cleavage in vitro. Mutational analysis shows that key residues important for guide-dependent target processing are also involved in guide-independent MjAgo function. This is the first characterization of guide-independent cleavage activity for an Argonaute protein potentially serving as a guide biogenesis pathway in a prokaryotic system.

Spinal muscular atrophy (SMA) is an autosomal recessive disorder characterized by the loss of ␣-motoneurons in the spinal cord followed by atrophy of skeletal muscles. SMA-determining candidate genes, SMN1 and SMN2, have been identified on human chromosome 5q. The corresponding SMN protein is expressed ubiquitously. It is coded by seven exons and contains conspicuous proline-rich motifs in its COOH-terminal third (exons 4, 5, and 6). Such motifs are known to bind to profilins (PFNs), small proteins engaged in the control of actin dynamics. We tested whether profilins interact with SMN via its polyproline stretches. Using the yeast two-hybrid system we show that profilins bind to SMN and that this binding depends on its proline-rich motifs. These results were confirmed by coimmunoprecipitation and by in vitro binding studies. Two PFN isoforms, I and II, are known, of which II is characteristic for central nervous system tissue. We show by in situ hybridization that both PFNs are highly expressed in mouse spinal cord and that PFN II is expressed predominantly in neurons. In motoneurons, the primary target of neurodegeneration in SMA, profilins are highly concentrated and colocalize with SMN in the cytoplasm of the cell body and in nuclear gems. Likewise, SMN and PFN I colocalize in gems of HeLa cells. Although SMN interacts with both profilin isoforms, binding of PFN II was stronger than of PFN I in all assays employed. Because the SMN genes are expressed ubiquitously, our findings suggest that the interaction of PFN II with SMN may be involved in neuron-specific effects of SMN mutations.Spinal muscular atrophies (SMAs) 1 types I, II, and III are autosomal hereditary diseases of graded severity in which loss of motoneurons leads to paralysis and subsequent atrophy of skeletal muscles, and in the most severe Werdnig-Hoffmann type I form, to death in early infancy. The corresponding SMA disease genes have been mapped to human chromosome 5q (1). There are two genes in close vicinity, the telomeric SMN1 (or SMN T ) and the centromeric SMN2 (or SMN C ; 2). Although they have identical coding sequences for a 294-amino acid SMN polypeptide, pathogenic mutations were found solely in SMN1. Its gene product, the 40-kDa protein "survival motoneuron," SMN, is expressed ubiquitously, and its concentration is reduced drastically in the spinal cord of SMA patients (3, 4). There is evidence, mostly from a yeast two-hybrid screen and from a Xenopus oocyte model system, that the SMN protein is engaged in the assembly of spliceosomal U snRNPs in the cytoplasm (5-7). Recently, the function of SMN has been demonstrated by a dominant-negative mutant of SMN which inhibits pre-mRNA splicing by blocking the formation of a mature spliceosome (8).The severity of SMA has been correlated with a deficient oligomerization of mutated SMN proteins, and it has been hypothesized that the critical level of functional SMN oligomers in normal motoneurons may be controlled by SMNЈs binding to a motoneuron-specific factor (9). There are seven coding exo...

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Gephyrin is a multifunctional protein involved in the clustering