Conformational energy calculations are reported for a number of possible helical structures of poly(D-L-peptides): the alpha helix, two single-stranded piDL, and five double-stranded pipiDL helices. For a poly(D-alanine-L-alanine) sequence, the energies of the various helices are found to differ by less than 1 kcal/(mol residue). For some helices (especially the piDL ones) two structural variants are predicted. These variants, called "goniomers", are characterized by reversed sequences of conformational angles but have the same screw sense and similar helical parameters. A biological implication of these goniomers is suggested, and their usefulness as a critical test for energy calculations is considered.
Fiber X-ray diffraction and measurement of fiber dimensions yields information about the hydration of DNA in fibers. The results obtained give us the fraction of nucleotides in the B form for the A-B transition or the rate of progression for the B-C transition as functions of the number of water molecules per nucleotide. The present experimental results confirm the importance of cooperativity in the A-B transition and the progressive change of the DNA double helix conformation during the C-B transition. At least twenty additional water molecules per nucleotide are necessary to stabilize the B form for DNA molecules in fibers following the A to B transition whereas only ten are sufficient when the B conformation is obtained starting from the C form.
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