Sheep chromosome 3 (Oar3) has the largest number of QTLs reported to be significantly associated with resistance to gastro-intestinal nematodes. This study aimed to identify single nucleotide polymorphisms (SNPs) within candidate genes located in sheep chromosome 3 as well as genes involved in major immune pathways. A total of 41 SNPs were identified across 38 candidate genes in a panel of unrelated sheep and genotyped in 713 animals belonging to 22 breeds across Asia, Europe and South America. The variations and evolution of immune pathway genes were assessed in sheep populations across these macro-environmental regions that significantly differ in the diversity and load of pathogens. The mean minor allele frequency (MAF) did not vary between Asian and European sheep reflecting the absence of ascertainment bias. Phylogenetic analysis revealed two major clusters with most of South Asian, South East Asian and South West Asian breeds clustering together while European and South American sheep breeds clustered together distinctly. Analysis of molecular variance revealed strong phylogeographic structure at loci located in immune pathway genes, unlike microsatellite and genome wide SNP markers. To understand the influence of natural selection processes, SNP loci located in chromosome 3 were utilized to reconstruct haplotypes, the diversity of which showed significant deviations from selective neutrality. Reduced Median network of reconstructed haplotypes showed balancing selection in force at these loci. Preliminary association of SNP genotypes with phenotypes recorded 42 days post challenge revealed significant differences (P<0.05) in fecal egg count, body weight change and packed cell volume at two, four and six SNP loci respectively. In conclusion, the present study reports strong phylogeographic structure and balancing selection operating at SNP loci located within immune pathway genes. Further, SNP loci identified in the study were found to have potential for future large scale association studies in naturally exposed sheep populations.

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Summary :66 Pampinta breed ewes were studied during milking to evaluate the infection and the effect of gastrointestinal nematode on milk production sheep system. Naturally infected ewes on pasture were randomly allocated to two groups: TG, suppressively treated group every four weeks with levamisole and UG, untreated group. Faecal nematode egg counts and larval differentiation were conducted monthly. Successive groups of worm free tracer lambs were grazed with ewes and then slaughtered for worm counts. Test-day milk yield of individual ewes was recorded and ewe machine-milking period length (MPL) were estimated. Faecal egg counts and tracer nematode numbers increased towards midsummer and declined sharply toward the end of the study. TG (188.0 ± 60 liters) produced more (p < 0.066) milk liters than UG (171.9 ± 52.2) and TG had significantly more extended (p < 0.041) MPL than those of UG. The present study showed that dairy sheep were negatively affected by worms, even when exposed to short periods of high acute nematode (mainly Haemonchus contortus) infection.

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Risk factors for anthelmintic resistance (AR) on bovine ranches were studied. Data were derived from a survey made to 50 ranch owners, who had conducted a faecal egg-count-reduction test. The questionnaire contained descriptors of bovine ranch management and nematode control. A case-control design study was undertaken and AR cases were present in 26 herds. Associations between the binary outcome variable (AR versus not AR) and risk factors recorded in the questionnaire were evaluated. Variables associated with the presence of AR at P< 0.15 and/or odds ratio (OR) > 2 were subjected to a multivariable logistic regression model. The main effects contributing to general AR (avermectin AVM and/or benzimidazole) in the final model were total number of annual treatments (OR 7.68; 95% CI 2.4 to 28.3) and use of more than 75% of AVM in the past (OR= 18.6; 95% CI 1.3 to 97.3), whereas for AVM resistance alone were total number of AVM annual treatments (OR= 11.5; 95% CI 2.9 to 45.5) and number of AVM Nov-Jan treatments (OR= 5.8; 95% CI 1.71 to 47.9). The results showed that treatment frequency, date of treatment and frequency of treatment in the past with a single drug were the main risk factors involved in AR development.Keywords: Nematode, cattle, anthelmintic resistance, risk factor. ResumoFatores de risco para resistência anti-helmíntica (AR) em fazendas de criação de bovinos foram estudados de dados obtidos de um levantamento em 50 propriedades. Em todas foram conduzidos testes de redução de contagem de ovos (opg) e um questionário preenchido pelos proprietários sobre o manejo e o controle de verminose nessas fazendas. Um estudo com desenho de caso controlado foi realizado e casos de AR estavam presentes em 26 rebanhos. Associações foram avaliadas entre a variável binária produzida (AR versus sem AR) e fatores de risco registrados nos questionários. Variáveis associadas com o resultado de interesse a P<0.15 e/ou razão de prevalência (OR) > 2 foram usados num modelo de regressão logística multivariável. Os principais efeitos contribuintes para AR geral (avermectina AVM e/ou benzimidazole), no modelo final, foram número total de tratamentos anuais (OR 7,68; 95% IC 2,4 a 28,3) e uso no passado mais que 75% de AVM (OR= 18,6; 95% IC 1,3 a 97,3), e para resistência à AVM foram número total de tratamentos anuais (OR=11,5; 95% IC 2,9 a 45,5), número de tratamentos com AVM de novembro a janeiro (OR= 5,8; 95% IC 1,71 a 47,9). Estes resultados mostraram que a frequência dos tratamentos, a época do ano em que foram feitos os tratamentos e a frequência dos tratamentos no passado com uma única droga foram os principais fatores de risco implicado no desenvolvimento de AR.Palavras-chave: Nematóide, gado, resistência anti-helmíntica, fator de risco.