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Analysis of otolith strontium isotope ratios (87Sr/86Sr) is an increasingly utilized approach for studying fish migration. We analysed surface and ground water from the Daly River catchment in the wet–dry tropics of northern Australia over 2 years. Analyses of otolith 87Sr/86Sr ratios were also conducted for freshwater sooty grunter (Hephaestus fuliginosus) and the putatively diadromous diamond mullet (Liza ordensis). Spatial variation in freshwater 87Sr/86Sr was high (range: 0.71612–0.78059), and there was strong seasonality in water 87Sr/86Sr, with highest values in the wet season. Temporal variation in water 87Sr/86Sr ratios is attributed to seasonal patterns in surface runoff from geological formations with radiogenic compositions versus input from groundwater aquifers interacting with less radiogenic formations. Temporal variation in water 87Sr/86Sr ratios precluded robust inference on movement within fresh water for both species, although movement across salinity gradients by diamond mullet was clearly identified. We conclude that temporally and spatially replicated water Sr data should be a general requisite for studies that analyse otolith Sr (87Sr/86Sr, Sr/Ca, Sr/Ba) to make inferences about fish movement and migration.

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The Mataranka Springs Complex is the headwater of the iconic Roper River of northern Australia. Using environmental tracers measured in springs and nearby boreholes, the origin of groundwater contributing to the springs was evaluated to help assess the impact of proposed groundwater extraction in the Cambrian Limestone Aquifer (CLA) for irrigation agriculture and for hydraulic fracturing in the Beetaloo Sub-basin (an anticipated world-class unconventional gas reserve). Major ions, Sr, 87Sr/86Sr, δ18O-H2O, δ2H-H2O, 3H, 14C-DIC were consistent with regional groundwater from the Daly and Georgina basins of the CLA as the sources of water sustaining the major springs (Rainbow and Bitter) and one of the minor springs (Warloch Pond). However, 3H = 0.34 TU in another minor spring (Fig Tree) indicated an additional contribution from a young (probably local) source. High concentrations of radiogenic 4He (> 10–7 cm3 STP g–1) at Rainbow Spring, Bitter Spring and in nearby groundwater also indicated an input of deeper, older groundwater. The presence of older groundwater within the CLA demonstrates the need for an appropriate baseline characterisation of the vertical exchange of groundwater in Beetaloo Sub-basin ahead of unconventional gas resource development.