Bacterial blight, blast, and sheath blight are the commonest diseases causing substantial yield loss in rice around the world. Stacking of broad-spectrum resistance genes/QTLs into popular cultivars is becoming a major objective of any disease resistance breeding program. The varieties ASD 16 and ADT 43 are the two popular, high yielding, and widely grown rice cultivars of South India, which are susceptible to bacterial blight (BB), blast, and sheath blight diseases. The present study was carried out to improve the cultivars (ASD 16 and ADT 43) through introgression of bacterial blight (xa5, xa13, and Xa21), blast (Pi54), and sheath blight (qSBR7-1, qSBR11-1, and qSBR11-2) resistance genes/QTLs by MABB (marker-assisted backcross breeding). IRBB60 (xa5, xa13, and Xa21) and Tetep (Pi54; qSBR7-1, qSBR11-1, and qSBR11-2) were used as donors to introgress BB, blast, and sheath blight resistance into the recurrent parents (ASD 16 and ADT 43). Homozygous (BC3F3 generation), three-gene bacterial blight pyramided (xa5 + xa13 + Xa21) lines were developed, and these lines were crossed with Tetep to combine blast (Pi54) and sheath blight (qSBR7-1, qSBR11-1, and qSBR11-2) resistance. In BC3F3 generation, the improved pyramided lines carrying a total of seven genes/QTLs (xa5 + xa13 + Xa21 + Pi54 + qSBR7-1 + qSBR11-1 + qSBR11-2) were selected through molecular and phenotypic assay, and these were evaluated for resistance against bacterial blight, blast, and sheath blight pathogens under greenhouse conditions. We have selected nine lines in ASD 16 background and 15 lines in ADT 43 background, exhibiting a high degree of resistance to BB, blast, and sheath blight diseases and also possessing phenotypes of recurrent parents. The improved pyramided lines are expected to be used as improved varieties or used as a potential donor in breeding programs. The present study successfully introgressed Pi54, and qSBR QTLs (qSBR7-1, qSBR11-1, and qSBR11-2) from Tetep and major effective BB-resistant genes (xa5, xa13, and Xa21) from IRBB60 into the commercial varieties for durable resistance to multiple diseases.

Cooking quality in rice grains is a complex trait which requires improvement. Earlier reports show varying genetic inXuence on these traits, except for a common agreement on waxy (Wx) and alkali degeneration (Alk) loci on chromosome 6. The present study involved 86 doubled haploid lines derived from an indica £ japonica cross involving IR64 and Azucena. Grain parameters viz., raw grain length (RGL), raw grain breadth (RGB), cooked grain length (CGL), cooked grain breadth (CGB), gelatinization temperature (GT), grain shape (RGS), length elongation ratio (LER) and breadth expansion ratio (BER) were subjected to mixed model mapping of quantitative trait loci (QTL). Segregation data of 175 markers covering a distance of 2395.5 cM spanning the entire genome were used. Fifteen main eVect QTLs were detected spread over the genome, except on chromosomes 4, 8 and 11. Thirty epistatic interactions signiWcantly inXuencing the traits were detected. Twelve of the main eVect QTLs were involved in epistatic interactions. One main eVect QTL associated with LER was detected near Alk locus. QTLs located for grain length on chromosomes 9 and 10 are reported for the Wrst time. Detection of many epistatic loci and involvement of main eVect QTLs in interactions demand for judicious selection of QTLs in markerassisted selection programmes.

In the present study a population consisting of 247 F 2 individuals from the cross between Basmati 370, a superior quality basmati variety and ASD16, a non-basmati high-yielding variety was analyzed for their segregation pattern of grain length (GL), grain breadth (GB), cooked grain length (CGL), cooked grain breadth (CGB), and gelatinization temperature (GT). Except GT, all other traits showed normal distribution indicating the polygenic control over the traits. The correlation analysis between traits indicated that GT had positive significant association with GL (0.125), and CGL (0.243). To identify main effect QTL (MQTL) for the above grain quality traits, both the parents were surveyed with 86 primer pairs of simple sequence repeats (SSR). The parental survey revealed 63.95% polymorphism between parents. In order to detect the MQTL associated with grain quality traits, a strategy of combining the DNA pooling from selected segregants and genotyping was adopted. The number of individuals forming the bulk influenced the identification of putative marker(s) for each of the traits. The association of putative markers identified based on DNA pooling from selected segregants was established by Single Marker Analysis (SMA). The results of SMA revealed that SSR markers, RM225 on chromosome #6 and RM247 on chromosome #12 showed significant association with GB and CGB respectively. It is established that molecular marker analysis involving DNA pooling of phenotypic extremes and selective genotyping helps to detect MQTL for complex traits involving early segregating generations. The molecular marker analysis involving the DNA pooling of phenotypic extremes could be a useful strategy to detect the genetic loci with major effects of other complex grain quality traits in rice.

2 Malnutrition arising from dietary deficiency of critically important mineral micronutrients such as iron (Fe) and zinc (Zn) is a serious problem affecting nearly half of the world's population. Screening for micronutrients rich breeding lines includes the estimation of grain micronutrient contents in the seed samples using atomic absorption spectrophotometer (AAS). Though the protocol produces precise results, it is usually costly and time consuming. The nutritionist started searching for newer methods like staining the particular plant tissue with dyes so the initial screening of among vast germplasm lines becomes easier. A set of four hundred and thirty genotypes were used in this experiment wherein the reliability and the cost effectiveness of the use of the staining method in place of the estimation using AAS was investigated. The intensity of the color developed was directly proportional to the amount of iron and zinc in the grains and were scored as 1, 2, 3, 4, and 5. The genotype 'UBC 7' has got the maximum level of iron (65.43 mg kg −1 ) with about 64 lines is found to contain higher levels of iron. The genotype 'UMI 421' had the maximum level of zinc (60.15 mg kg −1 ) along with ten lines showing richer zinc levels. The genotypes namely 'UMI 1069', 'UMI 630', 'UMI 473', 'UMI 327', and 'UMI 382' are found to be having considerably higher levels of iron and zinc in the kernels. These lines may be used for the introgression of the traits concerning micronutrient enhancement into the popular elite cultivars. When compared to the estimation with AAS, the staining methods with Prussian Blue and Dithizone (DTZ: 1,5-diphenyl thiocarbazone) are found be very cost effective and precise in identifying and categorizing the lines as micronutrient rich/deficit. The varying color intensities serve as a reliable selection criterion for grain 329 Downloaded by [The University of Manchester Library] at 08:07 27 November 2014 330 V. G. Shobhana et al. micronutrient contents in maize and other cereal crops. These protocols, could, therefore, be effectively used as the initial screening methodology and so the genotypes might be identified for higher grain micronutrient contents among huge population in a short period of time.

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