Human isolates of serotype III Streptococcus agalactiae (group B streptococcus [GBS]) can be divided into three separate phylogenetic lineages based on analysis of the restriction digest patterns (RDPs) of chromosomal DNA. Nine DNA sequences that are present in all isolates of the RDP III-3 phylogenetic lineage, but not in the other lineages, were identified by genomic subtractive hybridization. A complete physical map of a III-3 chromosome was constructed. Six of the nine III-3-specific sequences mapped to a 340-kb Sse8387I fragment which contains or is located close to known GBS virulence genes. One of the III-3-specific probes, AW-10, encodes part of GBSi1, a group II intron that is inserted at two sites within the GBS genome. The second chromosomal site for GBSi1 was isolated, sequenced, and mapped to a location near the locus responsible for hemolysin production. These findings suggest that the genetic variation that distinguishes the RDP type III-3 strains from other serotype III strains occurs largely within localized areas of the genome containing known or putative virulence genes.Streptococcus agalactiae bacteria (group B streptococci [GBS]) are the most common cause of serious bacterial disease in neonates and an important pathogen in pregnant women and adults with underlying illnesses (3). GBS are subclassified into nine serotypes based on the immunologic reactivity of the polysaccharide capsule. Types I, II, III, and V GBS cause the majority of neonatal human GBS diseases (3, 4). Serotype III GBS are of particular importance because these bacteria cause considerable early-onset (within the first week of life) and most late-onset (after the first week of life) disease in human neonates and the vast majority of neonatal GBS meningitis (3).It was previously reported that serotype III GBS isolates from Tokyo, Japan, and Salt Lake City, Utah, can be subclassified by analysis of HindIII and Sse8387I restriction digest patterns (RDPs) of chromosomal DNA into three major phylogenetic lineages, or RDP types III-1, III-2, and III-3 (21, 22). The overwhelming majority (91%) of invasive isolates from neonates were RDP type III-3, suggesting that these strains are more virulent than the other RDP types (21).Characterization of the genetic differences between virulent III-3 and less virulent III-2 strains will help us understand the phylogenetic relationships between different GBS strains. We used genomic subtractive hybridization to identify nine short DNA sequences that are found in all III-3 strains, but not in III-2 or III-1 strains, and thus appear to be markers of the RDP type III-3 phylogenetic lineage (5). In the present study, we constructed a physical map of the III-3 GBS chromosome and identified the location of the III-3-specific probes and other previously described GBS genes.(This work was presented in part at the 14th Lancefield International Symposium on Streptococci and Streptococcal Diseases, 11 to 15 October 1999, Auckland, New Zealand.)
MATERIALS AND METHODSProbes. The details of methods used t...