A whole genome average interval mapping approach identified eight QTL associated with P. thornei resistance in a DH population from a cross between the synthetic-derived wheat Sokoll and cultivar Krichauff. Pratylenchus thornei are migratory nematodes that feed and reproduce within the wheat root cortex, causing cell death (lesions) resulting in severe yield reductions globally. Genotypic selection using molecular markers closely linked to Pratylenchus resistance genes will accelerate the development of new resistant cultivars by reducing the need for laborious and expensive resistance phenotyping. A doubled haploid wheat population (150 lines) from a cross between the synthetic-derived cultivar Sokoll (P. thornei resistant) and cultivar Krichauff (P. thornei moderately susceptible) was used to identify quantitative trait loci (QTL) associated with P. thornei resistance. The resistance identified in the glasshouse was validated in a field trial. A genetic map was constructed using Diversity Array Technology and the QTL regions identified were further targeted with simple sequence repeat (SSR) and single-nucleotide polymorphism (SNP) markers. Six significant and two suggestive P. thornei resistance QTL were detected using a whole genome average interval mapping approach. Three QTL were identified on chromosome 2B, two on chromosome 6D, and a single QTL on each of chromosomes 2A, 2D and 5D. The QTL on chromosomes 2BS and 6DS mapped to locations previously identified to be associated with Pratylenchus resistance. Together, the QTL on 2B (QRlnt.sk-2B.1-2B.3) and 6D (QRlnt.sk-6D.1 and 6D.2) explained 30 and 48 % of the genotypic variation, respectively. Flanking PCR-based markers based on SSRs and SNPs were developed for the major QTL on 2B and 6D and provide a cost-effective high-throughput tool for marker-assisted breeding of wheat with improved P. thornei resistance.
Bioassays were undertaken in a controlled environment to assess whether the potential for suppression of Rhizoctonia root rot of wheat, in a highly calcareous topsoil, was positively influenced by nutrient (nitrogen (N) or phosphorus (P)) addition and whether any disease suppression response to augmented nutrition was affected by the addition of carbon (C), either as a readily available C source (sucrose) or as wheat stubble. The soil was P deficient, which limited plant growth, populations of putatively beneficial soil microorganisms, and microbial activity and diversity. This ultimately reduced potential for suppression of Rhizoctonia solani AG8. Addition of fertiliser P to the soil increased R. solani AG8 DNA and percent root infection but not the effectiveness of the pathogen. A positive effect of P fertiliser on plant growth partially compensated for the negative effect of increased root infection. Addition of P increased DNA for Microbacterium spp. where labile C had been added and in the presence of plant roots. Stubble addition alone, after 6 weeks of incubation, increased DNA for Pantoea agglomerans, Trichoderma A and Microbacterium spp. although differences in microbial activity and diversity between stubble treatments were only detected after the bioassay had commenced and P was added. Fertiliser P addition to stubble-amended soil resulted in less Rhizoctonia infection compared with that in soil without P or stubble addition. Effectiveness of R. solani AG8 was decreased by 50% with stubble amendment. The application of N alone did not have a marked effect on plant growth or potential for suppression of Rhizoctonia root disease. Agronomic management practices that affect quantity and lability of C input to soil, when combined with strategic P fertiliser decisions, are likely to improve the potential for development of suppression of Rhizoctonia root rot disease in cereal crops on alkaline and highly calcareous soils.
Soil-borne plant root disease caused by Rhizoctonia solani AG8 is prevalent in cereal farming systems worldwide, particularly in semiarid agricultural regions. A controlled environment study was undertaken using three Australian soils to test the hypothesis that OM input from crop roots and residues decreases infection by Rhizoctonia root rot via biologically mediated disease suppression. The specific aim was to determine the relative effect of two different OM inputs (wheat stubble or roots) on (a) abundance (DNA) of the pathogen R. solani AG8 and soil organisms putatively associated with disease suppression, and (b) incidence of Rhizoctonia root rot infection of wheat seedlings (% root infected). An increase in microbial biomass carbon (C) following OM amendment indicated a potential for enhanced general biological disease suppression in all soils. OM inputs also increased the population size (DNA) of certain bacteria and fungi putatively associated with specific suppression for Rhizoctonia root rot, suggesting a C resource-mediated change in microbial functions related to disease suppression. There were no significant changes to measured pathogens with stubble addition. However, OM inputs via root residues and rhizodeposits from living roots increased the populations of R. solani AG8 and Gaeumannomyces graminis var. tritici so that in subsequently planted wheat there was greater incidence of root disease infection and reduced plant shoot and root DM compared with that following OM input as stubble. Differences between soils in terms of plant and soil organism responses to each OM input suggest that abiotic factors modify the development of biological disease suppression and the expression of the disease.
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