Roifman Syndrome is a rare congenital disorder characterized by growth retardation, cognitive delay, spondyloepiphyseal dysplasia and antibody deficiency. Here we utilize whole-genome sequencing of Roifman Syndrome patients to reveal compound heterozygous rare variants that disrupt highly conserved positions of the RNU4ATAC small nuclear RNA gene, a minor spliceosome component that is essential for minor intron splicing. Targeted sequencing confirms allele segregation in six cases from four unrelated families. RNU4ATAC rare variants have been recently reported to cause microcephalic osteodysplastic primordial dwarfism, type I (MOPD1), whose phenotype is distinct from Roifman Syndrome. Strikingly, all six of the Roifman Syndrome cases have one variant that overlaps MOPD1-implicated structural elements, while the other variant overlaps a highly conserved structural element not previously implicated in disease. RNA-seq analysis confirms extensive and specific defects of minor intron splicing. Available allele frequency data suggest that recessive genetic disorders caused by RNU4ATAC rare variants may be more prevalent than previously reported.
SummaryAutism spectrum disorder (ASD) is phenotypically and genetically heterogeneous. We present a CRISPR gene editing strategy to insert a protein tag and premature termination sites creating an induced pluripotent stem cell (iPSC) knockout resource for functional studies of ten ASD-relevant genes (AFF2/FMR2, ANOS1, ASTN2, ATRX, CACNA1C, CHD8, DLGAP2, KCNQ2, SCN2A, TENM1). Neurogenin 2 (NGN2)-directed induction of iPSCs allowed production of excitatory neurons, and mutant proteins were not detectable. RNA sequencing revealed convergence of several neuronal networks. Using both patch-clamp and multi-electrode array approaches, the electrophysiological deficits measured were distinct for different mutations. However, they culminated in a consistent reduction in synaptic activity, including reduced spontaneous excitatory postsynaptic current frequencies in AFF2/FMR2-, ASTN2-, ATRX-, KCNQ2-, and SCN2A-null neurons. Despite ASD susceptibility genes belonging to different gene ontologies, isogenic stem cell resources can reveal common functional phenotypes, such as reduced functional connectivity.
Metastasis leads to the death of most cancer patients, and basal breast cancer is the most aggressive breast tumor type. Metastasis involves a complex cell migration process dependent on cytoskeletal remodeling such that targeting such remodeling in tumor cells could be clinically beneficial. Here we show that Hormonally Upregulated Neu-associated Kinase (HUNK) is dramatically downregulated in tumor samples and cell lines derived from basal breast cancers. Reconstitution of HUNK expression in basal breast cancer cell lines blocked actin polymerization and reduced cell motility, resulting in decreased metastases in two in vivo murine cancer models. Mechanistically, HUNK overexpression sustained the constitutive phosphorylation and inactivation of cofilin-1 (CFL-1), thereby blocking the incorporation of new actin monomers into actin filaments. HUNK reconstitution in basal breast cancer cell lines prevented protein phosphatase 2-A (PP2A), a phosphatase putatively acting on CFL-1, from binding to CFL-1. Our investigation of HUNK suggests that the interaction between PP2A and CFL-1 may be a target for antimetastasis therapy, particularly for basal breast cancers.M etastasis is a hallmark of cancer and remains the major cause of cancer-related mortality (90%) (1). Currently, there is no FDA-approved drug that specifically blocks metastasis. Metastasis is a multistep process that requires a cancer cell to leave a primary tumor, intravasate, survive in the blood, extravasate, migrate, invade through basement membranes and connective tissues, and establish a viable tumor in a distant site (2). Cytoskeletal reorganization and cell movement underlie all these events (3), and disruption of these processes could therefore constitute an effective anticancer approach.The major subtypes of breast cancer (luminal A/B/C, HER-2, and basal) can be distinguished by their gene expression profiles (4). The basal subtype is the most aggressive, has the worst prognosis, and shows the greatest extent of metastasis (4, 5). To identify molecules whose expression varies by breast cancer subtype and might be linked to metastasis, we screened the online data of Sorlie and colleagues (4) for candidate promoters and suppressors of metastasis. Our hypothesis was that the mRNA expression of kinases involved in cell migration and invasion should be altered in basal breast cancers relative to the mRNA profiles of other breast cancer subtypes. One molecule emerging from this screen was Hormonally Up-regulated Neuassociated Kinase (HUNK), an 80-kDa protein (6). HUNK was down-regulated almost threefold in basal cancer samples compared to the other subtypes. HUNK contains a 260-aa domain predicted to have serine/threonine kinase activity; however, to date, no clear kinase activity, substrates, interacting proteins, or indeed physiological role for HUNK have been identified (6, 7). In normal murine mammary cells, HUNK levels vary with the hormonal cycle (6). With respect to transformed cells, Wertheim et al. recently reported that HUNK is highly express...
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