Laguna Larga, a coastal lagoon in central Cuba, has been heavily altered by tourism infrastructure construction and sewage disposal. We hypothesize that this has decreased the circulation and caused eutrophication of the lagoon. To assess this, 12 bimonthly samplings were carried out in 2007-2008. Temperature, salinity, oxygen, nutrients and nitrogen, and phosphorous fractions (inorganic, organic, and total) were determined. Water and salt budgets, as well as biogeochemical fluxes of nitrogen and phosphorus were calculated using the LOICZ budget model for the three sections of the lagoon identified by morphological constrains and salinity patterns. Laguna Larga is a choked lagoon with restricted water circulation, low exchange, and high residence times that vary significantly along its sections. Residence time was estimated to be 0.1-0.7 years for the inner section and 1-9 days for the outer one. High levels of total nitrogen (annual means 126-137 μM, peaks up to 475 μM) and phosphorus (2.5-4.4 μM, peaks up to 14.5 μM) are evidence of eutrophication of Laguna Larga. During 2007, an average precipitation year, Laguna Larga exported water (703 m(3) d(-1)) and was a source of nitrogen (9.026 mmol m(-2) d(-1)) and phosphorus (0.112 mmol m(-2) d(-1)) to the adjacent sea. δ(15)N determinations in the seagrass Thalassia testudinum (-1.83 to +3.02 ‰) differed significantly between sites in the lagoon and offshore reference sites located W of the inlet, but were similar to those located E of the inlet. δ(15)N determinations in the seaweed Penicillus dumetosus (+1.02 to +4.2) did not show significant differences.

Microbialites are modern analogs of ancient microbial consortia that date as far back as the Archaean Eon. Microbialites have contributed to the geochemical history of our planet through their diverse metabolic capacities that mediate mineral precipitation. These mineral-forming microbial assemblages accumulate major ions, trace elements and biomass from their ambient aquatic environments; their role in the resulting chemical structure of these lithifications needs clarification. We studied the biogeochemistry and microbial structure of microbialites collected from diverse locations in Mexico and in a previously undescribed microbialite in Cuba. We examined their structure, chemistry and mineralogy at different scales using an array of nested methods including 16S rRNA gene high-throughput sequencing, elemental analysis, X-Ray fluorescence (XRF), X-Ray diffraction (XRD), Scanning Electron Microscopy-Energy Dispersive Spectroscopy (SEM-EDS), Fourier Transformed Infrared (FTIR) spectroscopy and Synchrotron Radiation-based Fourier Transformed Infrared (SR-FTIR) spectromicroscopy. The resulting data revealed high biological and chemical diversity among microbialites and specific microbe to chemical correlations. Regardless of the sampling site, Proteobacteria had the most significant correlations with biogeochemical parameters such as organic carbon (Corg), nitrogen and Corg:Ca ratio. Biogeochemically relevant bacterial groups (dominant phototrophs and heterotrophs) showed significant correlations with major ion composition, mineral type and transition element content, such as cadmium, cobalt, chromium, copper and nickel. Microbial-chemical relationships were discussed in reference to microbialite formation, microbial metabolic capacities and the role of transition elements as enzyme cofactors. This paper provides an analytical baseline to drive our understanding of the links between microbial diversity with the chemistry of their lithified precipitations.

Physical processes play important roles in controlling eutrophication and oligotrophication. In stratified lakes, internal waves can cause vertical transport of heat and nutrients without breaking the stratification, through boundary mixing events. Such is the case in tropical Valle de Bravo (VB) lake, where strong diurnal winds drive internal waves, boundary mixing and hypolimnetic warming during stratification periods. We monitored VB during 18 years (2001-2018) when important water-level fluctuations (WLF) occurred, affecting mixing and nutrient flux. Mean hypolimnetic temperature increase (0.06–1.04°C month-1) occurred in all the stratifications monitored. We analyzed temperature distributions and modeled the hypolimnion heat budget to assess vertical mixing between layers (26,618–140,526 m-3h-1), vertical diffusivity coefficient KZ (6.2x10-7–3.3x10-6 m2s-1) and vertical nutrient entrainment to epilimnion on monthly scale. Stability also varied as a function of WLF. Nutrient flux to the epilimnion ranged 0.36–5.99 mg m-2d-1 for soluble reactive phosphorus (SRP) and 5.8–97.1 mg m-2d-1 for dissolved inorganic nitrogen (DIN). During low water-level years, vertical nutrient fluxes increase and can account for up to >40% of the total external nutrients load to the lake. Vertical mixing changes related to WLF affect nutrient recycling, their flux to sediments, ecosystemic metabolic balance and planktonic composition of VB.

Laguna Larga (Cayo Coco, Cuba) is a eutrophic coastal lagoon due to tourism development. As part of long-term monitoring of Laguna Larga, we were able to follow the lagoon's water quality from 2015 to 2018 and could assess the impacts of Hurricane Irma (September 8–9, 2017) by intensifying our sampling frequency. Physicochemical parameters (salinity, pH, dissolved oxygen, dissolved inorganic nitrogen, dissolved reactive silicate and total nitrogen) exhibited significant variations associated with hurricane Irma. Salinity decreased due to the extraordinary rainfall of the hurricane (339.8 mm/24 h, a new record for Cayo Coco). The water level in the lagoon rose 0.85 m. Strong hurricane winds and intense runoff drove organic matter and sediment resuspension. Anoxia and an increase of nutrients occurred throughout the lagoon. The main biogeochemical impact was that it boosted these eutrophic conditions of the lagoon, to levels that lasted for several months. A significant correlation among nutrients, salinity and dissolved oxygen was found. After 6 months, water quality in the lagoon had recovered to conditions similar to those before the hurricane. The case of Laguna Larga sustains those coastal systems under anthropic pressure that can take longer to recover after extreme climatic events, and highlights the need for long-term monitoring of tropical coastal ecosystems.

Coral reefs are complex and biodiverse ecosystems that are undergoing significant change. Understanding reef composition and biodiversity at multiple spatial scales is necessary to track both large-scale and more subtle ecosystem changes. The Jardines de la Reina (JR) archipelago, located offshore of the island of Cuba, contains the largest marine protected area (MPA) in the Caribbean Sea but lacks multi-scale studies. In this contribution, we documented the diversity of scleractinian corals, octocorals, algae, and sponges across nested spatial scales spanning four orders of magnitude (10 1-10 5 m). In addition, we tested the hypothesis that species diversity followed a gradient along the ca. 200 km of reef tract. Across the archipelago, we examined benthic cover and species diversity within 255 photo-quadrats (25 × 25 cm) at 13 fore reef sites (two sampling locations per site, and 10 photo-quadrats per location). Small-scale (10 1 m) variability between photo-quadrats characterized the coral reef community structure in JR compared with local-(10 2 m) and mesoscale (10 4-10 5 m) variability. This finding suggests that biological processes (e.g., recruitment, competition) had primacy over hydrodynamics for driving the differences in reef community composition. However, the dominance of algae and low cover and diversity of scleractinian corals suggests the pervasive effects of global change on coral communities despite potential benefits provided by the MPA (e.g., oligotrophy and abundance of herbivores). There was no gradient of benthic community structure along the fore reef tract of JR; instead, a patchy distribution occurred in response to more subtle drivers acting at local scales. Overall, our multi-scale comparison was useful for differentiating the impacts of processes potentially impacting the JR reefs, thus providing important information to understand how reef communities are impacted by different environmental and anthropogenic stressors, and the potential benefits of MPAs.

The relevance of inland waters in the global carbon cycle has been stressed recently, particularly because of a reassessment of their capacity for carbon exportation to the atmosphere and to the sediments. Global surveys have also highlighted the acute lack of information on tropical systems, which are exposed to crescent problems in the Global Change panorama, such as contamination and eutrophication, as well as important impacts related to water management strategies and water supply (e.g., water level fluctuations). Oxygen dynamics, a method left behind in the past, has been revised and is now being increasingly implemented to estimate primary production and ecosystem respiration due to the urgency to understand carbon fluxes in aquatic systems. Therefore the details (advantages and disadvantages) of modern implementation of oxygen dynamics are revised and discussed here, particularly oriented to facilitate and promote their application in tropical aquatic systems (where it seems an adequate strategy). We suggest a unifying method pipeline in order to obtain comparable results among systems, towards the construction of a carbon flux inventory at larger (spatial and temporal) scales. This effort would contribute to understand the role and responses of tropical aquatic systems and regions (particularly as carbon sources or sinks) facing Global Change.

The reef crests of the Jardines de la Reina National Park (JRNP) are largely formed by Acropora palmata, but colonies of A. cervicornis and the hybrid A. prolifera are also present. This study shows spatial distribution of colonies, thickets and live fragments of these species in the fore reefs. Snorkeling was used to perform the direct observations. The maximum diameter of 4,399 colonies of A. palmata was measured and the health of 3,546 colonies was evaluated. The same was done to 168 colonies of A. cervicornis and 104 colonies of A. prolifera. The influence of the location and marine currents on a number of living colonies of A. palmata was analyzed. For such purpose, reef crests were divided into segments of 500 m. The marine park was divided into two sectors: East and West. The Caballones Channel was used as the reference dividing line. The park was also divided into five reserve zones. We counted 7,276 live colonies of Acropora spp. 1.4% was A. prolifera, 3.5% A. cervicornis and 95.1% A. palmata. There were 104 thickets of A. palmata, ranging from eight to 12 colonies, and 3,495 fragments; 0.6% was A. cervicornis and the rest A. palmata (99.4%). In the East sector, 263 colonies (3.8% of the total), six thickets (5.8%) and 32 fragments (1%) of A. palmate were recorded. In the same sector, there were 11 fragments (50%) of A.cervicornis and two (2%) colonies of A. prolifera. Health of A. palmata was evaluated as good and not so good in the study area. Health of A. cervicornis was critical and health of A. prolifera was good in all five reserve zones. There was a significant increase in the number of colonies from east to west (Χ2 = 11.5, gl = 3.0, p = 0.009). This corroborates the existence of an important abundance differences between the eastern and the western region of the JRNP. A negative relationship was observed between the number of colonies and the distance from the channel (Χ2 = 65.0, df = 3.0, p < 0.001). The influence of the channel, for the live colonies of A. palmata is greater within the first 2,000 m. It then decreases until approximately 6,000 m, and no significant increase beyond. The orientation of the reef crests significantly influenced the abundance of the colonies (Χ2 = 15.5, df = 2.9, p = 0.001). The results presented here provide a baseline for future research on the status of the populations of Acropora spp., considering that there has been a certain recovery of the species A. palmata during the last 10–16 years. Given the current status of the populations of Acropora spp., conservation actions focusing A. cervicornis should be prioritized.

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