No abstract

Microbes are usually believed to have cosmopolitan distributions. However, for estimating the global distributions of microorganisms, discriminating among cryptic species and eliminating undersampling biases are important challenges. We used a novel approach to address these problems and infer the global distribution of a given fungal ecological guild. We collected mushroom-forming fungi from Yakushima, Japan. We sequenced the internal transcribed spacer 2 (ITS2) from these samples and queried their sequences against GenBank. After identifying similar sequences, we tracked down the geographical origins of samples that yielded those sequences. We used Bayesian zero-inflated models to allow for species whose DNA sequences have not yet been deposited in GenBank. Results indicated that the geographical distribution of ectomycorrhizal (ECM) fungi was strongly constrained by host specificity, resulting in the occurrence of these fungi intensively in the neighbouring regions. On the other hand, saprotrophic (SAP) fungi were less constrained by climatic conditions, resulting in a much broader distribution range. We inferred that differences in constraints during colonization between ECM and SAP fungi were responsible for the different geographical distribution ranges. We hypothesize that the degree of host/habitat specificity and the degree of isolation of potentially suitable habitats determine microbial biogeographic patterns.

We examined the basal area of two life forms (conifers vs. broadleaf trees) along elevational gradients on Yakushima Island, Japan and on two series of geological substrate on Mount Kinabalu, Borneo. On Yakushima, total stand basal area abruptly increased from 700 to 1,050 m in accordance with the high dominance of conifers, indicating the presence of additive basal area of conifers in conifer-broadleaf mixed forests at higher elevations (1,050-1,300 m). Along two substrate series on Kinabalu, some forests at higher elevations (1,860-3,080 m) showed relatively high dominance of conifers, but conifer basal area did not appear to be additive. Conifers were emergents above the canopy of broadleaf trees in mixed forests on Yakushima, but two life forms usually coexisted in the single-story canopy in mixed forests on Kinabalu. Litterfall rate as a surrogate of productivity decreased with decreasing temperature along elevation on both the sites, but the rate of decrease was slower on Yakushima, where mixed forests at higher elevations showed relatively high rates. Thus, we suggest that additive basal area of conifers was linked to their emergent status, and that it enhanced productivity by complementary use of light by two life forms that occupy different stories. On Yakushima, typhoons are a major disturbance, but do not severely limit the height growth of conifers, allowing the development of twostory mixed forests. On Kinabalu, a major disturbance is El Nin˜o-driven drought, and hydraulic limitation to tree height may explain the non-additive and non-emergent nature of conifers.

While many tropical countries are experiencing rapid deforestation, some have experienced forest transition (FT) from net deforestation to net reforestation. Numerous studies have identified causative factors of FT, among which forest scarcity has been considered as a prerequisite for FT. In fact, in SE Asia, the Philippines, Thailand and Viet Nam, which experienced FT since 1990, exhibited a lower remaining forest area (30±8%) than the other five countries (68±6%, Cambodia, Indonesia, Laos, Malaysia, and Myanmar) where forest loss continues. In this study, we examined 1) the factors associated with forest scarcity, 2) the proximate and/or underlying factors that have driven forest area change, and 3) whether causative factors changed across FT phases (from deforestation to net forest gain) during 1980–2010 in the eight SE Asian countries. We used production of wood, food, and export-oriented food commodities as proximate causes and demographic, social, economic and environmental factors, as well as land-use efficiency, and wood and food trade as underlying causes that affect forest area change. Remaining forest area in 1990 was negatively correlated with population density and potential land area of lowland forests, while positively correlated with per capita wood production. This implies that countries rich in accessible and productive forests, and higher population pressures are the ones that have experienced forest scarcity, and eventually FT. Food production and agricultural input were negatively and positively correlated, respectively, with forest area change during 1980–2009. This indicates that more food production drives deforestation, but higher efficiency of agriculture is correlated with forest gain. We also found a U-shaped response of forest area change to social openness, suggesting that forest gain can be achieved in both open and closed countries, but deforestation might be accelerated in countries undergoing societal transition. These results indicate the importance of environmental, agricultural and social variables on forest area dynamics, and have important implications for predicting future tropical forest change.

High-density herbivore species often play an important role in forest regeneration. Native sika deer ( Cervus nippon yakushimae ) inhabit a high density (51.5-63.8 head/km 2 , estimated by a pellet count method) area in the western part of a lowland natural forest on Yakushima Island, Japan. To test experimentally the impact of sika deer on the mortality and the survivability of current-year seedlings, which are at a more vulnerable stage than the later stages, we constructed fenced exclosures, planted seeds of nine sapfruit tree species and compared the mortality and the survivability of current-year seedlings between fenced and unfenced quadrats. Large seeded species had significantly greater survivability in fenced quadrats than in unfenced quadrats. However, the survivability disagreed with feeding preferences. Sika deer activity increased seedling mortality of large-seeded species more than that of small-seeded species, and did not decrease much seedling survivability of not-preferred species. We found that the physical disturbance by the high density of sika deer resulted in mortality for both preferred and not-preferred species, and that deer herbivory was important for preferred species.

Habitat, diet and leaf chemistry are compared between Japanese and Barbary macaques to reveal the similarities and differences in dietary adaptations of temperate primates living at the eastern and western extremes of the genus Macaca. Tree species diversity and proportion of fleshy-fruited species are much higher in Japan than in North Africa. Both species spend considerable annual feeding time on leaves. Japanese macaques prefer fruits and seeds over leaves, and Barbary macaques prefer seeds. These characteristics are adaptive in temperate regions where fruit availability varies considerably with season, since animals can survive during the lean period by relying on leaf and other vegetative foods. The two species are different with respect to the higher consumption of herbs by Barbary macaques, and the leaves consumed contain high condensed and hydrolysable tannin for Barbary but not for Japanese macaques. Barbary macaques supplement less diverse tree foods with herbs. Because of the low species diversity and high tannin content of the dominant tree species, Barbary macaques may have developed the capacity to cope with tannin. This supports the idea that digestion of leaves is indispensable to survive in temperate regions where fruit and seed foods are not available for a prolonged period during each year.

No abstract

Summary 1.We investigated patterns of seed dispersal (i.e. dispersal distances and topography of seeddeposition sites) via the cheek pouches of Japanese macaques ( Macaca fuscata yakui ) during three seasons in a lowland forest on Yakushima Island, Japan. 2. The mean seed-dispersal distances were 16·7, 26·1, 41·8, and 32·4 m from the trunks of mother trees of Myrica rubra , Persea thunbergii , Neolitsea sericea , and Litsea acuminata , respectively. 3. We assessed the possible effect of macaque foraging patterns and the spatial distribution of fruiting trees on topography-specific seed dispersal. The topography of the locations of macaques differed across seasons, likely because the spatial distribution of fruiting trees determined the seasonal foraging patterns of macaques. 4. In early summer, macaques foraged on a ridge and fed on fruits of M. rubra and P. thunbergii , which were primarily distributed and dispersed within this area. In contrast, during the winter, macaques foraged within a valley and fed on fruits of L. acuminata , which were chiefly distributed and dispersed within the valley. 5. Seeds of M. rubra , P. thunbergii , and L. acuminata were directly dispersed to the specific topographic areas in which adult trees were distributed and in which juveniles have a predictably high probability of survival relative to random sites.