Advances in nanomedicine, coupled with novel methods of creating advanced materials at the nanoscale, have opened new perspectives for the development of healthcare and medical products. Special attention must be paid toward safe design approaches for nanomaterial‐based products. Recently, artificial intelligence (AI) and machine learning (ML) gifted the computational tool for enhancing and improving the simulation and modeling process for nanotoxicology and nanotherapeutics. In particular, the correlation of in vitro generated pharmacokinetics and pharmacodynamics to in vivo application scenarios is an important step toward the development of safe nanomedicinal products. This review portrays how in vitro and in vivo datasets are used in in silico models to unlock and empower nanomedicine. Physiologically based pharmacokinetic (PBPK) modeling and absorption, distribution, metabolism, and excretion (ADME)‐based in silico methods along with dosimetry models as a focus area for nanomedicine are mainly described. The computational OMICS, colloidal particle determination, and algorithms to establish dosimetry for inhalation toxicology, and quantitative structure–activity relationships at nanoscale (nano‐QSAR) are revisited. The challenges and opportunities facing the blind spots in nanotoxicology in this computationally dominated era are highlighted as the future to accelerate nanomedicine clinical translation.
In an in vitro nanotoxicity system, cell−nanoparticle (NP) interaction leads to the surface adsorption, uptake, and changes into nuclei/cell phenotype and chemistry, as an indicator of oxidative stress, genotoxicity, and carcinogenicity. Different types of nanomaterials and their chemical composition or "corona" have been widely studied in context with nanotoxicology. However, rare reports are available, which delineate the details of the cell shape index (CSI) and nuclear area factors (NAFs) as a descriptor of the type of nanomaterials. In this paper, we propose a machine-learning-based graph modeling and correlation-establishing approach using tight junction protein ZO-1-mediated alteration in the cell/nuclei phenotype to quantify and propose it as indices of cell−NP interactions. We believe that the phenotypic variation (CSI and NAF) in the epithelial cell is governed by the physicochemical descriptors (e.g., shape, size, zeta potential, concentration, diffusion coefficients, polydispersity, and so on) of the different classes of nanomaterials, which critically determines the intracellular uptake or cell membrane interactions when exposed to the epithelial cells at sub-lethal concentrations. The intrinsic and extrinsic physicochemical properties of the representative nanomaterials (NMs) were measured using optical (dynamic light scattering, NP tracking analysis) methods to create a set of nanodescriptors contributing to cell−NM interactions via phenotype adjustments. We used correlation function as a machine-learning algorithm to successfully predict cell and nuclei shapes and polarity functions as phenotypic markers for five different classes of nanomaterials studied herein this report. The CSI and NAF as nanodescriptors can be used as intuitive cell phenotypic parameters to define the safety of nanomaterials extensively used in consumer products and nanomedicine.
Daniel Rosenkranz received his B.Sc. degree in 2011 and his M.Sc. degree in 2014 from the University of Oldenburg. He later worked as a junior researcher at the University of Oldenburg till 2015, funded by the foundation of the metal industry in the northwest Germany. Since 2016, he is working as a Ph.D. scholar at the German Federal Institute of Risk Assessment and the German Federal Institute for Material Research and Testing. His research interests include nanomaterial characterization, fundamentals in analytics, matrix matched measurement strategies, low volume injection systems, protein-nanomaterial interactions.
SUMMARYSome issues of He-Chen-Zhang lattice Boltzmann equation (LBE) method (referred as HCZ model) (J. Comput. Physics 1999; 152:642-663) for immiscible multiphase flows with large density ratio are assessed in this paper. An extended HCZ model with a filter technique and mass correction procedure is proposed based on HCZ's LBE multiphase model. The original HCZ model is capable of maintaining a thin interface but is prone to generating unphysical oscillations in surface tension and index function at moderate values of density ratio. With a filtering technique, the monotonic variation of the index function across the interface is maintained with larger density ratio. Kim's surface tension formulation for diffuseinterface method (J. Comput. Physics 2005; 204:784-804) is then used to remove unphysical oscillation in the surface tension. Furthermore, as the density ratio increases, the effect of velocity divergence term neglected in the original HCZ model causes significant unphysical mass sources near the interface. By keeping the velocity divergence term, the unphysical mass sources near the interface can be removed with large density ratio. The long-time accumulation of the modeling and/or numerical errors in the HCZ model also results in the error of mass conservation of each dispersed phase. A mass correction procedure is devised to improve the performance of the method in this regard. For flows over a stationary and a rising bubble, and capillary waves with density ratio up to 100, the present approach yields solutions with interface thickness of about five to six lattices and no long-time diffusion, significantly advancing the performance of the LBE method for multiphase flow simulations.
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