Hybridization is a significant threat for endangered species and could potentially even lead to their extinction. This concern applies to the globally vulnerable Greater Spotted Eagle Aquila clanga, a species that co-occurs, and potentially interbreeds, with the more common Lesser Spotted Eagle Aquila pomarina in a vast area of Eastern Europe. We applied single nucleotide polymorphism (SNP) and microsatellite markers in order to study hybridization and introgression in 14 European spotted eagle populations. We detected hybridization and/or introgression in all studied sympatric populations. In most regions, hybridization took place prevalently between A. pomarina males and A. clanga females, with introgression to the more common A. pomarina. However, such a pattern was not as obvious in regions where A. clanga is still numerous. In the course of 16 years of genetic monitoring of a mixed population in Estonia, we observed the abandonment of A. clanga breeding territories and the replacement of A. clanga pairs by A. pomarina, whereby on several occasions hybridization was an intermediate step before the disappearance of A. clanga. Although the total number of Estonian A. clanga ¥ A. pomarina pairs was twice as high as that of A. clanga pairs, the number of pairs recorded yearly were approximately equal, which suggests a higher turnover rate in interbreeding pairs. This study shows that interspecific introgressive hybridization occurs rather frequently in a hybrid zone at least 1700-km wide: it poses an additional threat for the vulnerable A. clanga, and may contribute to the extinction of its populations.

The correct identification of hybrids is essential in avian hybridisation studies, but selection of the appropriate set of genetic markers for this purpose is at times complicated. Microsatellites and single nucleotide polymorphisms (SNPs) are currently the most commonly used markers in this field. We compare the efficiency of these two marker types, and their combination, in the identification of the threatened avian species, the greater spotted eagle and the lesser spotted eagle, as well as hybrids between the two species. We developed novel SNP markers from genome‐wide distributed 122 candidate introns using only sympatric samples, and tested these markers successfully in 60 sympatric and allopatric spotted eagles using Bayesian model‐based approaches. Comparatively, only one out of twelve previously described avian nuclear intron markers showed significant species‐specific allele frequency difference, thus stressing the importance of selecting the proper markers. Twenty microsatellites outperformed selected nine SNPs in species identification, but were poorer in hybrid detection, whereas the resolution power of ten microsatellites remained too low for correct assignment. A combination of SNPs and microsatellites resulted in the most efficient and accurate identification of all individuals. Our study shows that the use of various sets of markers could lead to strikingly different assignment results, hybridisation studies may have been affected by too low a resolution power of used markers, and that an appropriate set of markers is essential for successful hybrid identification.

Recent trends in the European Black StorkCiconia nigra population are geographically distinct: range expansion and adaptation to human activity dominate in western and central Europe, while declines-probably induced by landscape change-are reported in the east. We studied the large Lithuanian Black Stork population in the transition zone to explore whether, and how, the detrimental influences of recent Baltic landscape changes are balanced by the West European tendency of behavioural adaptation to human activity. Based on monitoring in sample plots, the current population was estimated at 650-950 pairs, indicating a significant decrease (possibly over 20%) during the last two decades. In comparison to the Latvian and Estonian populations, however, this decline is smaller, and the reproductive success remains at a high level [66% breeding success and 2.99 ± 0.97 (SD) fledglings per successful attempt, [2000][2001][2002][2003][2004][2005][2006]; this north-south gradient suggests a climate-mediated impact of habitat degradation in the Baltic countries. The storks are also nesting closer to forest edges and in younger stands than 15-30 years ago, which has probably reduced the nest-tree limitation, as indicated by an increased use of large oaks. Thus, habitat degradation and adaptation seem to be taking place simultaneously in the Lithuanian Black Stork population, as was expected from its geographical location. In general, our study supports the view that, whenever possible, species conservation strategies and the use of indicator species should be geographically explicit.

Geographical variation in wildlife–habitat relationships has seldom been studied. We explored macrohabitat use and geographically distinct responses to habitat availability in the Lesser Spotted Eagle Aquila pomarina near the centre (Lithuania) and on the edge (Estonia) of its European distribution range, and in different zones within Estonia. Land cover types and distances to landscape elements, as well as landscape diversity, were measured around 198 Eagle nests and random forest points. Out of six macrohabitat characteristics, two (landscape diversity, area of optimal foraging habitat) showed no geographical variation in use, or preferences by the Eagle. Whereas variation in the use of suboptimal foraging habitats and forests could be attributed to regional differences in their availability, there were geographically distinct preferences for distances between nests and landscape elements. The species avoided anthropogenic edges in Lithuania but tended even to prefer their proximity in Estonia; Eagles selected nest‐sites near remote waterbodies throughout Estonia but there was no such preference in Lithuania. The results did not support the hypothesis that latitudinal or range centre‐to‐periphery gradients existed in habitat relationships of the species; the main factor behind the geographical variation was probably land‐use history. In general, the diversity of geographical effects indicated that extrapolating local habitat relationships to other areas may give erroneous results, and large‐scale conservation planning regarding species’ habitat may be ineffective.

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The processes of competition and predation determine the degree to which species can coexist; the importance of competition in particular has been emphasized at high trophic levels. Competition exclusion will occur when habitat overlap between sympatric species is high. In this study, we investigated nesting habitat overlap between internationally protected diurnal tree-nesting avian predators of central Europe, namely, White-tailed Eagle (Haliaeetus albicilla), Lesser Spotted Eagle (Aquila pomarina), Black Stork (Ciconia nigra), and Osprey (Pandion haliaetus). We found significantly different nesting habitats among the study species and suggest that this could be a consequence of the resource-based segregation, but not a consequence of asymmetrical interspecific competition. The results also show that habitat of the recovering populations of White-tailed Eagle overlapped with the habitat used by the Lesser Spotted Eagle, Black Stork, and Osprey to varying extents with a niche overlap values being below the competition exclusion threshold. Nevertheless, we suggest that competition by White-tailed Eagle at a population level may limit Osprey, though not Lesser Spotted Eagle or Black Stork.

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