In many lichen-forming fungi, molecular phylogenetic analyses lead to the discovery of cryptic species within traditional morphospecies. However, in some cases, molecular sequence data also questions the separation of phenotypically characterised species. Here we apply an integrative taxonomy approach – including morphological, chemical, molecular, and distributional characters – to re-assess species boundaries in a traditionally speciose group of hair lichens, Bryoria sect. Implexae. We sampled multilocus sequence and microsatellite data from 142 specimens from a broad intercontinental distribution. Molecular data included DNA sequences of the standard fungal markers ITS, IGS, GAPDH, two newly tested loci (FRBi15 and FRBi16), and SSR frequencies from 18 microsatellite markers. Datasets were analysed with Bayesian and maximum likelihood phylogenetic reconstruction, phenogram reconstruction, STRUCTURE Bayesian clustering, principal coordinate analysis, haplotype network, and several different species delimitation analyses (ABGD, PTP, GMYC, and DISSECT). Additionally, past population demography and divergence times are estimated. The different approaches to species recognition do not support the monophyly of the 11 currently accepted morphospecies, and rather suggest the reduction of these to four phylogenetic species. Moreover, three of these are relatively recent in origin and cryptic, including phenotypically and chemically variable specimens. Issues regarding the integration of an evolutionary perspective into taxonomic conclusions in species complexes, which have undergone recent diversification, are discussed. The four accepted species, all epitypified by sequenced material, are Bryoria fuscescens, B. glabra, B. kockiana, and B. pseudofuscescens. Ten species rank names are reduced to synonymy. In the absence of molecular data, they can be recorded as the B. fuscescens complex. Intraspecific phenotype plasticity and factors affecting the speciation of different morphospecies in this group of Bryoria are outlined.
The diet of woodland caribou (Rangifer tarandus caribou Gmelin, 1788) in the boreal zone of North America is poorly understood. In large part this is because they occur at low densities in environments that are difficult to access. The only method available for identifying food requirements of wildlife has been histological examination of fecal samples, a technique that suffers from a number of serious limitations. Our study used fecal samples from 125 woodland caribou and animal-borne videos to address two questions: (1) How do the new technologies, video cameras and DNA barcoding, compare with conventional diet analyses of fecal pellets? and (2) Can these techniques be used to determine the diet of woodland caribou? Our results show that microhistology estimates provide an inaccurate approximation of diet; <15% correlation with either barcoding or video techniques. Taxonomic resolution of the histology estimates was very low. Taxonomic resolution to species found in fecal samples was good using video (42%) but better using DNA barcoding (94%). DNA barcoding and video technologies provided dietary data that were highly correlated (70%) among major groups of plants, with terrestrial lichens dominating the late winter through early spring diet. The high species resolution of DNA barcoding may be supplemented by information on habitat preference and degree of feeding selectivity obtained by video surveillance. These novel technologies may be important tools for identifying critical habitat requirements and associated conservation strategies needed for elusive wildlife species that are endangered.
BackgroundComprehensive biotic surveys, or ‘all taxon biodiversity inventories’ (ATBI), have traditionally been limited in scale or scope due to the complications surrounding specimen sorting and species identification. To circumvent these issues, several ATBI projects have successfully integrated DNA barcoding into their identification procedures and witnessed acceleration in their surveys and subsequent increase in project scope and scale. The Biodiversity Institute of Ontario partnered with the rare Charitable Research Reserve and delegates of the 6th International Barcode of Life Conference to complete its own rapid, barcode-assisted ATBI of an established land trust in Cambridge, Ontario, Canada.New informationThe existing species inventory for the rare Charitable Research Reserve was rapidly expanded by integrating a DNA barcoding workflow with two surveying strategies – a comprehensive sampling scheme over four months, followed by a one-day bioblitz involving international taxonomic experts. The two surveys resulted in 25,287 and 3,502 specimens barcoded, respectively, as well as 127 human observations. This barcoded material, all vouchered at the Biodiversity Institute of Ontario collection, covers 14 phyla, 29 classes, 117 orders, and 531 families of animals, plants, fungi, and lichens. Overall, the ATBI documented 1,102 new species records for the nature reserve, expanding the existing long-term inventory by 49%. In addition, 2,793 distinct Barcode Index Numbers (BINs) were assigned to genus or higher level taxonomy, and represent additional species that will be added once their taxonomy is resolved. For the 3,502 specimens, the collection, sequence analysis, taxonomic assignment, data release and manuscript submission by 100+ co-authors all occurred in less than one week. This demonstrates the speed at which barcode-assisted inventories can be completed and the utility that barcoding provides in minimizing and guiding valuable taxonomic specialist time. The final product is more than a comprehensive biotic inventory – it is also a rich dataset of fine-scale occurrence and sequence data, all archived and cross-linked in the major biodiversity data repositories. This model of rapid generation and dissemination of essential biodiversity data could be followed to conduct regional assessments of biodiversity status and change, and potentially be employed for evaluating progress towards the Aichi Targets of the Strategic Plan for Biodiversity 2011–2020.
Lichens are an important winter food source for woodland caribou ( Rangifer tarandus caribou ), but quantifying their abundance is difficult. Here, we present an efficient method for assessing lichen biomass at the stand level in boreal forests. We measured lichens occurring in high enough abundance to serve as a winter food source for woodland caribou in 51 boreal forest stands. Samples of each species or genus were collected from each stand and a mean abundance (cover) to biomass ratio was established. The method does not require samples to be collected or weighed, due to this predetermined relationship, and it also accounts for the variation in biomass among lichen species that are equally abundant. The variation in lichen growth between stands was assessed by means of five lichen abundance classes. The proposed method was tested in 34 stands with a wide range of ages and stem densities. The average time to complete a lichen biomass assessment was approximately 2 h. This method is an efficient and accurate tool that can assist forest managers and researchers with ecological studies on lichens or with monitoring changes in lichen biomass over time and with habitat assessments for organisms for which lichens are important, such as woodland caribou.
Forest managers have a responsibility to identify and conserve ecologically exceptional forest stands. In North America, priority areas of old‐growth forest are often identified based primarily on the age of trees within the stand. However, delineating forests with high conservation value based solely on tree age is an oversimplification. Therefore, we propose a different view – that of forest continuity, a view that is more prevalent in Europe. We contend that forests that have been continuously wooded over time, whether old‐growth trees are present or not, have higher conservation value than areas that have old trees but that may not always have been forested. Identifying forests with high continuity requires a different index than tree age. We argue that the relative richness and abundance of lichens can be effective indicators of forest continuity, discuss how forest managers might operationalize this system, and explain why it might be a more ecologically relevant indicator of priority forest areas.
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