Recent studies have demonstrated that detection of environmental DNA (eDNA) from aquatic vertebrates in water bodies is possible. The Burmese python, Python bivittatus, is a semi-aquatic, invasive species in Florida where its elusive nature and cryptic coloration make its detection difficult. Our goal was to develop a diagnostic PCR to detect P. bivittatus from water-borne eDNA, which could assist managers in monitoring this invasive species. First, we used captive P. bivittatus to determine whether reptilian DNA could be isolated and amplified from water samples. We also evaluated the efficacy of two DNA isolation methods and two DNA extraction kits commonly used in eDNA preparation. A fragment of the mitochondrial cytochrome b gene from P. bivittatus was detected in all water samples isolated with the sodium acetate precipitate and the QIAamp DNA Micro Kit. Next, we designed P. bivittatus-specific primers and assessed the degradation rate of eDNA in water. Our primers did not amplify DNA from closely related species, and we found that P. bivittatus DNA was consistently detectable up to 96 h. Finally, we sampled water from six field sites in south Florida. Samples from five sites, where P. bivittatus has been observed, tested positive for eDNA. The final site was negative and had no prior documented evidence of P. bivittatus. This study shows P. bivittatus eDNA can be isolated from water samples; thus, this method is a new and promising technique for the management of invasive reptiles.
We conducted an extensive simulation study to compare the performance of a large group of plotless density estimators (PDEs) to obtain clarification of their relative performance in a diversity of sampling situations. The PDEs studied included well—known ones from the literature plus some extensions and modifications introduced here. The simulations cover 96 combinations of 6 spatial patterns, 4 sample sizes, and 4 population densities. We made comparisons within classes of similar estimators, and we indicate the best—performing PDEs out of the complete set studied. Over all spatial patterns, the angle—order estimator with measurements to the third—closest individual in each quadrant had the lowest relative root—mean—squared error (RRMSE), followed by the same estimation method with measurements to the second closest individual in each quadrant. Also performing well were the variable area transect, the ordered distance estimator using the third closest individual, and an extension of the Kendall—Moran estimator that searches for the second nearest neighbor and pools search areas from all sample points. Opinions and recommendations are given as to which PDEs perform well enough and are practical enough to deserve strong consideration for use in the field.
Abstract. Monitoring animal populations is an essential component of wildlife research and management. Population indices can be efficient methods for monitoring populations when more labour-intensive densityestimation procedures are impractical or invalid to apply, and many monitoring objectives can be couched in an indexing framework. Indexing procedures obtain maximal utility if they exhibit key characteristics, including being practical to apply, being sensitive to changes or differences in the target species' population, having an inherent variance formula and allowing for precision in index values, and relying on as few assumptions as possible. Additional useful characteristics include being able simultaneously to monitor multiple animal species and to describe spatial characteristics of the species monitored. Here, a paradigm is presented that promotes the characteristics that make indices most useful. Observations are made at stations located throughout the area of interest. Stations can take many forms, depending on the observations, and range from points for visual counts to tracking plots to chew cards, and many others. A wide variety of observation methods for many animal species can fit into this format. Observations are made at each station on multiple occasions for each indexing session. Geographic location data for each station are encouraged to be collected. No assumptions of independence are made among stations, nor among observation occasions. Measurements made at each station are required to be continuous or unboundedly discrete. The formula for a general index to describe population levels is presented and its variance formula is derived. Issues relevant to the application of this methodology, and indices in general, are discussed.
Three methods of assessing relative abundance of wild canids were evaluated on a population of dingoes, Canis lupus dingo (Corbett), on a cattle station in south-westem Queensland. The tested indices relied on measurements of activity based on spoor. Two of the techniques attracted the target species to tracking stations through the use of a novel (fatty acid scent) or food-based (buried meat) attractant. The third index (activity) measured the number of dingo tracks crossing tracking stations placed at 1-km intervals along a road transect. All three indices had a high level of agreement for detecting differences in relative abundance, with correlation coefficients exceeding 0.85. When the stations were analysed in 1-km segments, the activity index proved the most sensitive, producing proportionally more positive responses than either of the other two indices irrespective of whether the tracking stations were assessed at 1-, 2-, 3- or 4-day intervals. Inconsistencies between indices existed, with the derived abundance indices not showing the anticipated reduction following population reduction. The effect of season and the interaction between dingo activity and index methodology are discussed.
IntroductionTerrestrial top-predators are expected to regulate and stabilise food webs through their consumptive and non-consumptive effects on sympatric mesopredators and prey. The lethal control of top-predators has therefore been predicted to inhibit top-predator function, generate the release of mesopredators and indirectly harm native fauna through trophic cascade effects. Understanding the outcomes of lethal control on interactions within terrestrial predator guilds is important for zoologists, conservation biologists and wildlife managers. However, few studies have the capacity to test these predictions experimentally, and no such studies have previously been conducted on the eclectic suite of native and exotic, mammalian and reptilian taxa we simultaneously assess. We conducted a series of landscape-scale, multi-year, manipulative experiments at nine sites spanning five ecosystem types across the Australian continental rangelands to investigate the responses of mesopredators (red foxes, feral cats and goannas) to contemporary poison-baiting programs intended to control top-predators (dingoes) for livestock protection.ResultShort-term behavioural releases of mesopredators were not apparent, and in almost all cases, the three mesopredators we assessed were in similar or greater abundance in unbaited areas relative to baited areas, with mesopredator abundance trends typically either uncorrelated or positively correlated with top-predator abundance trends over time. The exotic mammals and native reptile we assessed responded similarly (poorly) to top-predator population manipulation. This is because poison baits were taken by multiple target and non-target predators and top-predator populations quickly recovered to pre-control levels, thus reducing the overall impact of baiting on top-predators and averting a trophic cascade.ConclusionsThese results are in accord with other predator manipulation experiments conducted worldwide, and suggest that Australian populations of native prey fauna at lower trophic levels are unlikely to be negatively affected by contemporary dingo control practices through the release of mesopredators. We conclude that contemporary lethal control practices used on some top-predator populations do not produce the conditions required to generate positive responses from mesopredators. Functional relationships between sympatric terrestrial predators may not be altered by exposure to spatially and temporally sporadic application of non-selective lethal control.
There is growing interest in the role that apex predators play in shaping terrestrial ecosystems and maintaining trophic cascades. In line with the mesopredator release hypothesis, Australian dingoes (Canis lupus dingo and hybrids) are assumed by many to regulate the abundance of invasive mesopredators, such as red foxes Vulpes vulpes and feral cats Felis catus, thereby providing indirect benefits to various threatened vertebrates. Several recent papers have claimed to provide evidence for the biodiversity benefits of dingoes in this way. Nevertheless, in this paper we highlight several critical weaknesses in the methodological approaches used in many of these reports, including lack of consideration for seasonal and habitat differences in activity, the complication of simple track-based indices by incorporating difficult-to-meet assumptions, and a reduction in sensitivity for assessing populations by using binary measures rather than potentially continuous measures. Of the 20 studies reviewed, 15 of them (75%) contained serious methodological flaws, which may partly explain the inconclusive nature of the literature investigating interactions between invasive Australian predators. We therefore assert that most of the “growing body of evidence” for meso-predator release is merely an inconclusive growing body of literature only. We encourage those interested in studying the ecological roles of dingoes relative to invasive mesopredators and native prey species to account for the factors we identify, and caution the value of studies that have not done so.
Wild pigs (Sus scrofa) are widespread across many landscapes throughout the world and are considered to be an invasive pest to agriculture and the environment, or conversely a native or desired game species and resource for hunting. Wild pig population monitoring is often required for a variety of management or research objectives, and many methods and analyses for monitoring abundance are available. Here, we describe monitoring methods that have proven or potential applications to wild pig management. We describe the advantages and disadvantages of methods so that potential users can efficiently consider and identify the option(s) best suited to their combination of objectives, circumstances, and resources. This paper offers guidance to wildlife managers, researchers, and stakeholders considering population monitoring of wild pigs and will help ensure that they can fulfill their monitoring objectives while optimizing their use of resources.
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