The Pecos River between Sumner Dam and Brantley Reservoir (320 km), New Mexico, contains populations of several pelagic-spawning cyprinid fish species, including the federally threatened Pecos bluntnose shiner (Notropis simus pecosensis). Females of this reproductive guild release semi-buoyant eggs that are fertilized and drift, incubate, and hatch on increased flows associated with spring runoff, summer rainstorms, or irrigation releases from Sumner Reservoir. We used artificial eggs (beads) to estimate transport and retention of natural eggs during an irrigation release in five reaches of the Pecos River occupied by bluntnose shiner. Bead retention was highest (1.7-4.5%/km) in the broad complex reaches of upper critical habitat and the quality section (upper 200 km), and bead retention was lowest (0.6%/km) in the narrow, deep, channelized reach of lower critical habitat (60 km). Only 10% of beads were transported more than 50 km from their release location in the reach with highest retention. Modeled spawning events in all five reaches showed highest egg retention of 35% in the reach that also had the highest density of adult Pecos bluntnose shiner (37 km from Cortez Gasline to Acme). The model predicted that during an irrigation release, about 90% of bluntnose shiner eggs produced during a natural spawning event are retained in the upper 250 km of occupied habitat, with only 10% passing downstream into unsuitable habitat or into Brantley Reservoir. We conclude that retention of drifting eggs is greatest during high flows when flood wave attenuation and channel storage are greatest and in broad complex channel reaches, which coincide with existing population centers.

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Long‐distance drift of eggs and larvae has been identified as a possible cause of downstream displacement and poor recruitment of the endangered Rio Grande silvery minnow (Hybognathus amarus; silvery minnow). Seven experiments were conducted using artificial eggs to estimate silvery minnow egg drift and retention in the Albuquerque and Isleta reaches of the regulated Middle Rio Grande, New Mexico, USA over a range of flows during expected spawning times. Bead retention varied by reach, discharge, and shape of the hydrograph. Highest retention (6.9 and 9.7% per km in the Albuquerque and Isleta reaches, respectively) occurred on the ascending limb of a high flow in areas where there was substantial floodplain inundation. Retention was maximized at different flows in each reach (97 and 140 m3/s, respectively), possibly associated with reach‐specific floodplain inundation thresholds. Lowest retention in each reach (2.1 and 1.7%, respectively) occurred on the descending limb of low and high flows, respectively. Of the silvery minnow eggs produced in the combined Albuquerque and Isleta reaches in 2005, 8–14% are predicted to have been retained in the Albuquerque Reach (67 km) and 49–83% in the Isleta Reach (86 km) based on the distribution of adult fish and measured bead retention rates. Although silvery minnow propagules are capable of drifting long distances, our study suggests that considerable retention occurs in the Middle Rio Grande. Habitat restoration to increase channel habitat complexity, and flow management to promote floodplain inundation should help to retain a greater proportion of propagules in upstream reaches. Copyright © 2010 John Wiley & Sons, Ltd.

A beach/habitat-building flow (i.e., test flood) of 1274 m 3 /s, released from Glen Canyon Dam down the Colorado River through Grand Canyon, had little effect on distribution, abundance, or movement of native fishes, and only short-term effects on densities of some nonnative species. Shoreline and backwater catch rates of native fishes, including juvenile humpback chub (Gila cypha), flannelmouth suckers (Catostomus latipinnis), and bluehead suckers (C. discobolus), and all ages of speckled dace (Rhinichthys osculus), were not significantly different before and after the flood. Annual spring spawning migrations of flannelmouth suckers into the Paria River and endangered humpback chub into the Little Colorado River (LCR) took place during and after the flood, indicating no impediment to fish migrations. Pre-spawning adults staged in large slack water pools formed at the mouths of these tributaries during the flood. Net movement and habitat used by nine radio-tagged adult humpback chub during the flood were not significantly different from prior observations. Diet composition of adult humpback chub varied, but total biomass did not differ significantly before, during, and after the flood, indicating opportunistic feeding for a larger array of available food items displaced by the flood. Numbers of nonnative rainbow trout (Oncorhynchus mykiss) Ͻ152 mm total length decreased by ϳ8% in electrofishing samples from the dam tailwaters (0-25 km downstream of the dam) during the flood. Increased catch rates in the vicinity of the LCR (125 km downstream of the dam) and Hell's Hollow (314 km downstream of the dam) suggest that these young trout were displaced downstream by the flood, although displacement distance was unknown since some fish could have originated from local populations associated with intervening tributaries. Abundance, catch rate, body condition, and diet of adult rainbow trout in the dam tailwaters were not significantly affected by the flood, and the flood did not detrimentally affect spawning success; catch of young-of-year increased by 20% in summer following the flood. Post-flood catch rates of nonnative fathead minnows (Pimephales promelas) in shorelines and backwaters, and plains killifish (Fundulus zebrinus) in backwaters decreased in the vicinity of the LCR, and fathead minnows increased near Hell's Hollow, suggesting that the flood displaced this nonnative species. Densities of rainbow trout and fathead minnows recovered to pre-flood levels eight months after the flood by reinvasion from tributaries and reproduction in backwaters. We concluded that the flood was of insufficient magnitude to substantially reduce populations of nonnative fishes, but that similar managed floods can disadvantage alien predators and competitors and enhance survival of native fishes.

The largest population of endangered humpback chub Gila cypha inhabits the lower Little Colorado River (LCR) and the main-stem Colorado River near its confluence with the LCR in Grand Canyon, Arizona. At present, fish in both rivers spawn almost exclusively in the LCR. Flows in the main-stem Colorado River are regulated by Glen Canyon Dam, and water temperature approximates predam winter temperatures year-round. The LCR continues to provide a relatively natural hydrograph and seasonal warming patterns. Length-weight relationships among adult humpback chub from the lower Colorado River basin showed a seasonal pattern of declining condition during spring spawning season followed by recovery of condition during summer through early winter. Fish from the main stem recovered condition more rapidly after reproduction than did fish from the LCR and may have benefited from dam-mediated environmental changes. Grand Canyon Colorado River fish had the greatest weight at length of eight locations sampled in the upper and lower basins. Records since 1978 indicate a decline in condition of lower basin humpback chub coincident with a reported decline in population size in Grand Canyon. We recommend increased monitoring of all populations, including mark-recapture studies to provide population estimates during the spawning season and condition monitoring during October-November to determine more subtle changes in fish health.The humpback chub Gila cypha is one of four endangered big-river fish species endemic to the Colorado River Basin; the other species are the Colorado pikeminnow Ptychocheilus lucius, razorback sucker Xyrauchen texanus, and bonytail