Planktonic organisms are good indicators of water quality but are rarely used in Mexican riverine studies in spite of the high level of contamination in these lotic waters. In this study, we focused on the plankton of the river Amacuzac in Mexico and a large saline waterbody, Lake Tequisquitengo, which is located in the Amacuzac river basin. We collected samples at three sites in the River Amacuzac and one at Lake Tequisquitengo from May 2015 to March–April of 2016. We analysed the physicochemical variables, coliform bacteria, and biological oxygen demand levels. We also quantified phytoplankton and zooplankton. Our results indicate that the study sites are mesotrophic with high densities of diatoms and cyanobacteria. Among the zooplankton, the dominant organisms were rotifers. The constancy of planktonic taxa was high in the lake but low in the river. The Descy index ranged from 2.9 to 4.5 in the river and from 4.0 to 5.0 in the lake. The saprobic index shows that the system is β‐mesosaprobic. The species diversity was higher in the river than in the lake. Our study shows that plankton can efficiently be used to evaluate the water quality in rivers and lakes.
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