Summary Understanding mechanisms by which agricultural practices affect freshwater ecosystems helps to inform land‐use policies and management strategies aimed at mitigating effects of agriculture on biodiversity. Land‐use activities in the catchment, riparian and local scales likely influence stream fish communities via multiple pathways, for instance, by modifying the instream habitat. We investigated the mechanisms driving local stream fish taxonomic richness and functional diversity in South Brazilian grasslands by testing a theoretical path model in which we specified a priori relationships predicting how land use at multiple scales affects instream habitat and fish communities. Agricultural activities adjacent to streams (i.e. local impact on the streambank) and catchment‐scale cropland area were positively related to macrophyte cover and negatively associated with coarse particulate organic matter (CPOM, i.e. woody debris and leaf litter). Local impact also increased substrate siltation and homogenisation. Riparian vegetation in the upstream buffer ameliorated instream habitat condition by dampening macrophyte proliferation and providing CPOM. Fish species richness increased with both macrophyte cover and CPOM, revealing multiple pathways of agricultural influence. However, functional diversity decreased only with substrate siltation, revealing a response to agricultural activities adjacent to sample sites. Agricultural streams showed a replacement of benthic and lithophilic species by a larger number of morphologically similar and macrophyte‐associated nektonic fish. Our study indicates that land‐use adjacent to streams and upstream riparian zones is critical for maintaining taxonomically and functionally diverse fish communities due to their strong effects on instream habitat. Protection and recovery of riparian zones from land‐use change can mitigate the effects of agriculture on fish communities in South Brazilian grasslands.

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Protecting riparian vegetation around streams is vital in reducing the detrimental effects of environmental change on freshwater ecosystems and in maintaining aquatic biodiversity. Thus, identifying ecological thresholds is useful for defining regulatory limits and for guiding the management of riparian zones towards the conservation of freshwater biota. Using nationwide data on fish and invertebrates occurring in small Brazilian streams, we estimated thresholds of native vegetation loss in which there are abrupt changes in the occurrence and abundance of freshwater bioindicators and tested whether there are congruent responses among different biomes, biological groups and riparian buffer sizes. Mean thresholds of native vegetation cover loss varied widely among biomes, buffer sizes and biological groups: ranging from 0.5% to 77.4% for fish, from 2.9% to 37.0% for aquatic invertebrates and from 3.8% to 43.2% for a subset of aquatic invertebrates. Confidence intervals for thresholds were wide, but the minimum values of these intervals were lower for the smaller riparian buffers (50 and 100 m) than larger ones (200 and 500 m), indicating that land use should be kept away from the streams. Also, thresholds occurred at a lower percentage of riparian vegetation loss in the smaller buffers, and were critically lower for invertebrates: reducing only 6.5% of native vegetation cover within a 50‐m riparian buffer is enough to cross thresholds for invertebrates. Synthesis and applications. The high variability in biodiversity responses to loss of native riparian vegetation suggests caution in the use of a single riparian width for conservation actions or policy definitions nationwide. The most sensitive bioindicators can be used as early warning signals of abrupt changes in freshwater biodiversity. In practice, maintaining at least 50‐m wide riparian reserves on each side of streams would be more effective to protect freshwater biodiversity in Brazil. However, incentives and conservation strategies to protect even wider riparian reserves (~100 m) and also taking into consideration the regional context will promote a greater benefit. This information should be used to set conservation goals and to create complementary mechanisms and policies to protect wider riparian reserves than those currently required by the federal law.

Motivation: We compiled a global database of long-term riverine fish surveys from 46 regional and national monitoring programmes and from individual academic research efforts, with which numerous basic and applied questions in ecology and global change research can be explored. Such spatially and temporally extensive datasets have been lacking for freshwater systems in comparison to terrestrial ones. Main types of variables contained: The database includes 11,386 time-series of riverine fish community catch data, including 646,270 species-specific abundance records, together with metadata related to the geographical location and sampling methodology of each time-series. Spatial location and grain: The database contains 11,072 unique sampling locations (stream reach), spanning 19 countries, five biogeographical realms and 402 hydrographical basins worldwide. Time period and grain: The database encompasses the period 1951-2019. Each timeseries is composed of a minimum of two yearly surveys (mean = 8 years) and represents a minimum time span of 10 years (mean = 19 years). Major taxa and level of measurement: The database includes 944 species of rayfinned fishes (Class Actinopterygii). Software format: csv. Main conclusion: Our collective effort provides the most comprehensive long-term community database of riverine fishes to date. This unique database should interest ecologists who seek to understand the impacts of human activities on riverine fish biodiversity and to model and predict how fish communities will respond to future environmental change. Together, we hope it will promote advances in macroecological research in the freshwater realm.

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Photo-identification allows individual recognition of animal species based on natural marks, being an alternative to other more stressful artificial tagging/marking techniques. An increasing number of studies with different animal groups has shown that photo-identification can successfully be used in several situations, but its feasibility to study freshwater fishes is yet to be explored. We demonstrate the potential use of photo-identification for intraspecific recognition of individuals in the streamdwelling loricariid Rineloricaria aequalicuspis. We tested photo-identification in laboratory and field conditions based on the interindividual variability in abdominal bony plates. Our test yielded high correct matches in both laboratory (100%) and field conditions (> 97%), comparable to other reliable techniques and to studies that successfully used photo-identification in other animals. In field conditions, the number of correct matches did not differ statistically between computer-assisted and nakedeye identification. However, the average time expended to conclude computer-assisted photo evaluations was about half of the time expended to conclude naked-eye evaluations. This result may be exacerbated when using database with large number of images. Our results indicate that photo-identification can be a feasible alternative technique to study freshwater fish species, allowing for a wider use of mark-recapture in ecological and behavioral studies.A foto-identificação permite o reconhecimento individual de espécies de animais baseando-se em marcas naturais, sendo uma alternativa a outras técnicas de marcação artificial mais estressantes comumente usadas. O número crescente de estudos que usam foto-identificação em diferentes grupos animais mostra que esta técnica pode ser utilizada com sucesso, mas a viabilidade em estudos com peixes de água doce ainda não foi avaliada. Nós demonstramos o uso potencial da foto-identificação para o reconhecimento individual de peixes com indivíduos do loricarídeo Rineloricaria aequalicuspis. Nós testamos fotoidentificação em condições de laboratório e de campo com base na variabilidade inter-individual das placas ósseas abdominais. O teste resultou em elevada porcentagem de acerto nas comparações, tanto para a condição de laboratório (100%) quanto para a de campo (> 97%), o que é comparável com outras técnicas confiáveis e com outros estudos que empregaram fotoidentificação com sucesso. No teste de campo, o número de acertos não diferiu estatisticamente entre auxílio de computador e olho nu. Entretanto, o tempo médio despendido para concluir as avaliações com o auxílio de computador foi cerca da metade do tempo despendido para as avaliações a olho nu. Esse resultado pode ser exacerbado em avaliações com um grande número de imagens. Nossos resultados indicam que a foto-identificação pode ser uma técnica alternativa viável para estudar peixes de água doce e possibilita um uso mais amplo da marcação e recaptura para estudos ecológicos e comportamentais.

Understanding variability in the composition of aquatic assemblages requires a multiscale perspective, since processes operating at different spatial scales (from regional to local) drive the community assembly. Here, the relative importance of environmental variables on fish species composition in streams of the Brazilian savanna (Cerrado) is assessed and quantified at local and landscape scales. The importance of both local and landscape environmental variables in structuring fish assemblages was supported. Local variables explained a substantially higher amount of variance of fish assemblages than landscape variables. However, the shared explanation indicate that landscape variables had a complementary effect. The streams sampled were mostly headwaters at similar altitudes and with similar watershed sizes, so the sensitivity of the fish assemblages, even to small landscape gradients, is highlighted. Maintaining these important instream habitat characteristics close to natural conditions seems to be essential for conserving stream fish species, and for this, the landscape context should be taken into account. Considering the near‐pristine condition of the streams studied, these findings can be used as a reference for further studies addressing the effects of human modifications on stream fish biodiversity of the Cerrado.

Human activities in the riparian zone can affect the feeding of stream fish because they alter autochthonous production (periphyton, macrophytes and aquatic insects) and allochthonous inputs (terrestrial insects, leaves, seeds and fruits). In the present study we investigated how the diet and intestinal length of a persistent and generalist fish species (Bryconamericus iheringii, Characidae) responds to riparian modifications in 31 subtropical streams in southern Brazil. We hypothesised that intestinal length would be longer in populations inhabiting streams with converted riparian vegetation as a consequence of greater consumption of an indigestible and low-protein diet. Populations of B. iheringii from streams with a degraded riparian zone and reduced canopy cover had longer intestinal length (after accounting for body size), which was associated with decreased consumption of terrestrial plants and invertebrates and increased ingestion of filamentous algae, macrophytes and detritus. These results indicate that anthropic alteration of riparian zones and increased canopy openness trigger shifts in the diet and intestinal length of B. iheringii. The findings suggest that plasticity in intestinal length is an important characteristic to determine whether fish populations can persist in a variety of habitat conditions and cope with the digestion of a greater proportion of low-quality and low-protein food items in human-altered environments.