For over 50 years, the great tit (Parus major) has been a model species for research in evolutionary, ecological and behavioural research; in particular, learning and cognition have been intensively studied. Here, to provide further insight into the molecular mechanisms behind these important traits, we de novo assemble a great tit reference genome and whole-genome re-sequence another 29 individuals from across Europe. We show an overrepresentation of genes related to neuronal functions, learning and cognition in regions under positive selection, as well as increased CpG methylation in these regions. In addition, great tit neuronal non-CpG methylation patterns are very similar to those observed in mammals, suggesting a universal role in neuronal epigenetic regulation which can affect learning-, memory- and experience-induced plasticity. The high-quality great tit genome assembly will play an instrumental role in furthering the integration of ecological, evolutionary, behavioural and genomic approaches in this model species.
The design of artificial nestboxes for the study of secondary hole-nesting birds: a review of methodological inconsistencies and potential biases. Acta Ornithol. 45: 1-26.
Living organisms generally occur at the highest population density in the most suitable habitat. Therefore, invasion of and adaptation to novel habitats imply a gradual increase in population density, from that at or below what was found in the ancestral habitat to a density that may reach higher levels in the novel habitat following adaptation to that habitat. We tested this prediction of invasion biology by analyzing data on population density of breeding birds in their ancestral rural habitats and in matched nearby urban habitats that have been colonized recently across a continental latitudinal gradient. We estimated population density in the two types of habitats using extensive point census bird counts, and we obtained information on the year of urbanization when population density in urban habitats reached levels higher than that of the ancestral rural habitat from published records and estimates by experienced ornithologists. Both the difference in population density between urban and rural habitats and the year of urbanization were significantly repeatable when analyzing multiple populations of the same species across Europe. Population density was on average 30 % higher in urban than in rural habitats, although density reached as much as 100-fold higher in urban habitats in some species. Invasive urban bird species that colonized urban environments over a long period achieved the largest increases in population density compared to their ancestral rural habitats. This was independent of whether species were anciently or recently urbanized, providing a unique cross-validation of timing of urban invasions. These results suggest that successful invasion of urban habitats was associated with gradual adaptation to these habitats as shown by a significant increase in population density in urban habitats over time.
Nest boxes are a popular management tool to increase nest site availability for hole-nesting birds, but biological consequences of this technique in different habitats are poorly studied. In our study area in southwestern Estonia, nest boxes for small passerines were set up in deciduous and coniferous woods. Great tits Parus major preferred the food-rich deciduous habitat for breeding, as judged by higher nest-box occupation, earlier egg-laying and larger clutches and eggs. However, in coniferous habitat more and heavier young fledged per nest, and the return rate of both fledglings and adults was higher. We propose two mutually non-exclusive explanations, both related to the maladaptive outcome of the provision of nest boxes: (i) in the preferred habitat, nest boxes caused a supra-optimal breeding density leading to an ecological trap; (ii) boxes drastically improved the non-preferred habitat, but birds were unable to exploit the breeding habitat fully. One should be careful in providing large numbers of artificial nest sites in preferred habitats. Sometimes it would be more preferable to improve less favourable habitats by removing critical constraints.
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