By elevating the pH to 9.5 in 3 M KCl, the concentration of the N intermediate in the bacteriorhodopsin photocycle has been enhanced, and time-resolved resonance Raman spectra of this intermediate have been obtained. Kinetic Raman measurements show that N appears with a half-time of 4 +/- 2 ms, which agrees satisfactorily with our measured decay time of the M412 intermediate (2 +/- 1 ms). This argues that M412 decays directly to N in the light-adapted photocycle. The configuration of the chromophore about the C13 = C14 bond was examined by regenerating the protein with [12,14-2H]retinal. The coupled C12-2H + C14-2H rock at 946 cm-1 demonstrates that the chromophore in N is 13-cis. The shift of the 1642-cm-1 Schiff base stretching mode to 1618 cm-1 in D2O indicates that the Schiff base linkage to the protein is protonated. The insensitivity of the 1168-cm-1 C14-C15 stretching mode to N-deuteriation establishes a C = N anti (trans) Schiff base configuration. The high frequency of the C14-C15 stretching mode as well as the frequency of the 966-cm-1 C14-2H-C15-2H rocking mode shows that the chromophore is 14-s-trans. Thus, N contains a 13-cis, 14-s-trans, 15-anti protonated retinal Schiff base.(ABSTRACT TRUNCATED AT 250 WORDS)
Rotationally resonant magnetization exchange, a new nuclear magnetic resonance (NMR) technique for measuring internuclear distances between like spins in solids, was used to determine the distance between the C-8 and C-18 carbons of retinal in two model compounds and in the membrane protein bacteriorhodopsin. Magnetization transfer between inequivalent spins with an isotropic shift separation, delta, is driven by magic angle spinning at a speed omega r that matches the rotational resonance condition delta = n omega r, where n is a small integer. The distances measured in this way for both the 6-s-cis- and 6-s-trans-retinoic acid model compounds agreed well with crystallographically known distances. In bacteriorhodopsin the exchange trajectory between C-8 and C-18 was in good agreement with the internuclear distance for a 6-s-trans configuration [4.2 angstroms (A)] and inconsistent with that for a 6-s-cis configuration (3.1 A). The results illustrate that rotational resonance can be used for structural studies in membrane proteins and in other situations where diffraction and solution NMR techniques yield limited information.
The spectroscopic properties of spheroidene and a series of spheroidene analogs with extents of π-electron conjugation ranging from 7 to 13 carbon−carbon double bonds were studied using steady-state absorption, fluorescence, fluorescence excitation, and time-resolved absorption spectroscopy. The spheroidene analogs studied here were 5‘,6‘-dihydro-7‘,8‘-didehydrospheroidene, 7‘,8‘-didehydrospheroidene, and 1‘,2‘-dihydro-3‘,4‘,7‘,8‘-tetradehydrospheroidene and taken together with data from 3,4,7,8-tetrahydrospheroidene, 3,4,5,6-tetrahydrospheroidene, 3,4-dihydrospheroidene already published (DeCoster, B.; Christensen, R. L.; Gebhard, R.; Lugtenburg, J.; Farhoosh, R.; Frank, H. A. Biochim. Biophys. Acta 1992, 1102, 107) provide a systematic series of molecules for understanding the molecular features that control energy transfer to bacteriochlorophyll in photosynthetic bacterial light-harvesting complexes. All of the molecules were purified by high-pressure liquid chromatographic techniques prior to the spectroscopic experiments. The absorption spectra of the molecules were observed to red-shift with increasing extent of π-electron conjugation. The room temperature fluorescence data show a systematic crossover from dominant S1 → S0 (2Ag → 11Ag) emission to dominant S2 → S0 (11Bu → 11Ag) with increasing extent of conjugation. The S2 fluorescence quantum yields of all the carotenoids in the series were measured here and indicate that 3,4-dihydrospheroidene with nine carbon−carbon double bonds has an S2 quantum yield of (2.7 ± 0.3) × 10-4 which is the highest value in the series. The lifetimes of the S1 states of the molecules were determined from time-resolved transient absorption spectroscopy and found to decrease as the conjugated chain length increases. The transient data are discussed in terms of the energy gap law for radiationless transitions which allows a prediction of the S1 energies of the molecules. The implications of these results for the process of light harvesting by carotenoids in photosynthesis are discussed.
We have used a new solid-state NMR technique--rotational resonance--to determine both internuclear distances and the relative orientations of chemical groups (dihedral angles) in retinal bound to bacteriorhodopsin (bR) and in retinoic acid model compounds. By matching the rotational resonance condition (delta = n omega r/2 pi, where delta is the difference in isotropic chemical shifts for two dipolar coupled spins, omega r/2 pi is the mechanical rotational frequency of the sample in the MAS experiment, and n is a small integer denoting the order of the resonance), we selectively reintroduce the dipolar coupling and enhance the rate of magnetization exchange. Spectroscopic data and theoretical simulations of the magnetization exchange trajectories for the 8,18-13C dipolar coupled pair in retinoic acid model compounds, crystallized in both the 6-s-cis and 6-s-trans forms, indicate that an accurate determination of the internuclear distance is possible. For the n = 1 resonance we find the distance determination to be reasonably independent of the relative orientation of the groups. In contrast, for the n = 2 resonance, there is a more pronounced dependence on the relative orientation of the groups which permits an estimate of the angle around the 6-s bond for the cis and trans forms to be 42 +/- 5 degrees and 90 +/- 10 degrees, respectively, in good agreement with crystallography. In bR we demonstrate that the 8-13C-18-13C distance is 4.1 A and the average 8-13C-16-13C/8-13C-17-13C distance is 3.3-3.5 A.(ABSTRACT TRUNCATED AT 250 WORDS)
Magic-angle spinning NMR spectra have been obtained of the bathorhodopsin photointermediate trapped at low temperature (less than 130 K) by using isorhodopsin samples regenerated with retinal specifically 13C-labeled at positions 8, 10, 11, 12, 13, 14, and 15. Comparison of the chemical shifts of the bathorhodopsin resonances with those of an all-trans-retinal protonated Schiff base (PSB) chloride salt show the largest difference (6.2 ppm) at position 13 of the protein-bound retinal. Small differences in chemical shift between bathorhodopsin and the all-trans PSB model compound are also observed at positions 10, 11, and 12. The effects are almost equal in magnitude to those previously observed in rhodopsin and isorhodopsin. Consequently, the energy stored in the primary photoproduct bathorhodopsin does not give rise to any substantial change in the average electron density at the labeled positions. The data indicate that the electronic and structural properties of the protein environment are similar to those in rhodopsin and isorhodopsin. In particular, a previously proposed perturbation near position 13 of the retinal appears not to change its position significantly with respect to the chromophore upon isomerization. The data effectively exclude charge separation between the chromophore and a protein residue as the main mechanism for energy storage in the primary photoproduct and argue that the light energy is stored in the form of distortions of the bathorhodopsin chromophore.
Conformational changes of the retinal chromophore about the C14-C15 bond in bacteriorhodopsin (BR) have been proposed in models for the mechanism of light-driven proton transport. To determine the C14-C15 conformation in BR's Lsso intermediate, we have examined the resonance Raman spectra of BR derivatives regenerated with retinal deuterated at the 14 and 15 positions. Vibrational calculations show that the C14-2H and C15-2H rocking modes form symmetric (A) and antisymmetric (B) combinations in [14,15_2H]retinal chromophores. When there is a trans conformation about the single bond between C14 and C15 (14-s-trans), a small frequency separation or splitting is observed between the A and B modes, which are found at =970 cm-'. In 14-s-cis molecules, the splitting is large, and the Raman-active symmetric A mode is predicted at =850 cm -1.In addition, the monodeuterium rock should appear at an unusually low frequency (920 -930 cm ')in the 14-2H-labeled 14-s-cis molecules. These patterns are insensitive to computa- L5sO contains a 14-s-trans chromophore and suggest that only 14-s-trans structures are involved in the proton pumping photocycle of BR.Bacteriorhodopsin (BR) is an intrinsic membrane protein that functions as a light-driven proton pump in the bacterium Halobacterium halobium (1). The photocycle of BR begins with the photochemical all-trans-to-13-cis isomerization ofthe retinal prosthetic group in the parent pigment BR5.. The pigment then decays through the K and L550 intermediates, and the Schiff base nitrogen deprotonates producing M412. A number of models have been proposed to explain how isomerization and Schiff-base deprotonation are coupled to proton transport. Isomerization-driven charge separation is one widely accepted idea (2-4), and models involving a cis conformation at the single bond between C14 and C15 (14-s-cis) for the K and L550 intermediates have been proposed by Schulten and Tavan (5) and by Liu et al. (6).Vibrational spectroscopy has been the primary tool for determining the structure of the retinal chromophore in BR's early photointermediates (7). In a recent study, Smith et al. (8) examined the conformation of the C14-C15 bond in K and L550 by recognizing that one characteristic of an s-cis bond is the -100 cm -1 lowering of the C14-C15 stretching mode. The C14-C15 mode in L550 was assigned at ==1172 cm-1, close to the 1155 cm-1 value observed in later Fourier transform infrared studies (9). The absence of any large frequency-lowering of this mode compared with the 13-cis protonated Schiff base (PSB) suggested that the chromophore was 14-s-trans. Subsequent MNDO (modified neglect of differential overlap) calculations by Tavan and Schulten (10) confirmed the lowering of the C14-C15 stretching mode in s-cis conformers; however, they argued that by displacing the Schiff base counterion they could enhance the tr-electron delocalization sufficiently to counteract the geometric effect of s-cis isomerization. While there is no direct support for their assumed counterion distances, ...
Our previous solid-state 13C NMR studies on bR have been directed at characterizing the structure and protein environment of the retinal chromophore in bR568 and bR548, the two components of the dark-adapted protein. In this paper, we extend these studies by presenting solid-state NMR spectra of light-adapted bR (bR568) and examining in more detail the chemical shift anisotropy of the retinal resonances near the ionone ring and Schiff base. Magic angle spinning (MAS) 13C NMR spectra were obtained of bR568, regenerated with retinal specifically 13C labeled at positions 12-15, which allowed assignment of the resonances observed in the dark-adapted bR spectrum. Of particular interest are the assignments of the 13C-13 and 13C-15 resonances. The 13C-15 chemical resonance for bR568 (160.0 ppm) is upfield of the 13C-15 resonance for bR548 (163.3 ppm). This difference is attributed to a weaker interaction between the Schiff base and its associated counterion in bR568. The 13C-13 chemical shift for bR568 (164.8 ppm) is close to that of the all-trans-retinal protonated Schiff base (PSB) model compound (approximately 162 ppm), while the 13C-13 resonance for bR548 (168.7 ppm) is approximately 7 ppm downfield of that of the 13-cis PSB model compound. The difference in the 13C-13 chemical shift between bR568 and bR548 is opposite that expected from the corresponding 15N chemical shifts of the Schiff base nitrogen and may be due to conformational distortion of the chromophore in the C13 = C14-C15 bonds.(ABSTRACT TRUNCATED AT 250 WORDS)
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