Molecular orientations and assembled structures of C(60) molecules on Pt(111) have been characterized by low-temperature scanning tunneling microscopy for coverage between 0.1 ML and 1.5 ML. At room temperature, C(60) molecules preferentially decorate the steps and nucleate into single layer islands (SLIs) with hexagonal close-packed structures upon increasing coverage. C(60) islands comprise two differently oriented C(60)∕Pt(111)-(√13 × √13) R13.9° phases, in which five types of molecular orientation of C(60) carbon cage configurations are clearly identified by the high-resolution scanning tunneling microscopy image. Further annealing treatment leads to more uniform molecular orientation without apparent aggregation of C(60) SLIs. As coverage increases above 1 ML, domains corresponding to (2√3 × 2√3) R30° superstructure appear. To explain the above transformation, an interfacial reconstruction model is proposed according to the detailed study of the molecular adsorption structures in different domains.

The morphologies, self-assembly structures, and stability of cobalt-phthalocyanines (CoPc) molecules adsorbed on Cu(001) with coverage ranging from 0.2 monolayer (ML) to 1.6 ML are investigated by ultrahigh-vacuum low-temperature scanning tunneling microscopy (UHV LT-STM) at liquid nitrogen temperature. Upon increasing the deposition of CoPc molecules various structures, such as isolated adsorption, quasi-hexagonal structure, square root(29) x square root(29) structure, are well characterized by the corresponding high-resolution STM images. The CoPc-CoPc intermolecular interaction and CoPc-substrate interfacial interaction dominate the structural evolutions. For the coverage higher than 1 ML, CoPc molecules preferentially locate on top of the molecules underneath and organize into square root(58) x square root(58) structure. As more and more CoPc molecules adsorb on the first layer, in some square root(58) x square root(58) regions molecular insertion leads to the formation of the square root(29) x square root(29) domain to effectively decrease the energy of the whole system.

Scanning tunneling microscopy at low temperature and low molecular coverage (∼1%) was combined with density-functional theory calculations to investigate the adsorption of isolated perylene-3,4,9,10-tetracarboxyl acid dianhydride (PTCDA) molecules on KCl(100) surfaces. Experimentally, we used epitaxial thin KCl(100) films on Ag(100) of about 3 layers in thickness. After deposition at 100 K, the PTCDA molecules are statistically distributed on the terraces with an azimuthal orientation of the long axis along the polar ⟨110⟩ orientation. After annealing at about 150 to 200 K the molecules are exclusively found at step-edge sites. Thereby, several configurations are observed, the most typical being a site where the PTCDA molecules protrude into the step edge, forming vacancies at the step edge. The total-energy calculations predict this step-edge adsorption site to be energetically favorable compared to the adsorption on terraces. The corrugation of the calculated potential energy surface is below 1 eV, with diffusion barriers of about 0.6 eV, which explains the mobility of the PTCDA molecules at elevated temperatures.