A careful investigation of the structures and charge densities of the β and R polymorphs of p-nitrophenol has been carried out. Although the two forms crystallize in different monoclinic cells, the crystal densities are similar. There are, however, several differences in the intramolecular structural features of the two forms, including the C-C-O bond angles and the N-O distances. The R form exhibits a large number of intermolecular hydrogen contacts. More importantly, a detailed charge density analysis of the two forms has brought out significant differences in the charge distribution in both the intra-and the intermolecular hydrogen bonding regions. Deformation density maps reveal many differences in the bonding regions of the molecule in the two forms. Charge migration from the benzene ring region of the molecule to the nitro and the hydroxyl groups occurs as the structure changes from the β to the R form. Relief maps of the negative Laplacians in the plane of the intermolecular hydrogen bonds show polarization of the oxygen lone-pair electrons toward hydrogen. The molecular dipole moments in the solid state, derived from the pseudoatomic charges in the β and R structures, are considerably larger (∼20 D) than the value in the free molecule.
The topological and the electrostatic properties of the
aspirin
drug molecule were determined from high-resolution X-ray diffraction
data at 90 K, and the corresponding results are compared with the
theoretical calculations. The electron density at the bond critical
point of all chemical bonds including the intermolecular interactions
of aspirin has been quantitatively described using Bader’s
quantum theory of “Atoms in Molecules”. The electrostatic
potential of the molecule emphasizes the preferable binding sites
of the drug and the interaction features of the molecule, which are
crucial for drug–receptor recognition. The topological analysis
of hydrogen bonds reveals the strength of intermolecular interactions.
An experimental charge-density analysis of pyrazinamide (a first line antitubercular drug) was performed using high-resolution X-ray diffraction data [(sin θ/λ)max = 1.1 Å(-1)] measured at 100 (2) K. The structure was solved by direct methods using SHELXS97 and refined by SHELXL97. The total electron density of the pyrazinamide molecule was modeled using the Hansen-Coppens multipole formalism implemented in the XD software. The topological properties of electron density determined from the experiment were compared with the theoretical results obtained from CRYSTAL09 at the B3LYP/6-31G** level of theory. The crystal structure was stabilized by N-H...N and N-H...O hydrogen bonds, in which the N3-H3B...N1 and N3-H3A...O1 interactions form two types of dimers in the crystal. Hirshfeld surface analysis was carried out to analyze the intermolecular interactions. The fingerprint plot reveals that the N...H and O...H hydrogen-bonding interactions contribute 26.1 and 18.4%, respectively, of the total Hirshfeld surface. The lattice energy of the molecule was calculated using density functional theory (B3LYP) methods with the 6-31G** basis set. The molecular electrostatic potential of the pyrazinamide molecule exhibits extended electronegative regions around O1, N1 and N2. The existence of a negative electrostatic potential (ESP) region just above the upper and lower surfaces of the pyrazine ring confirm the π-electron cloud.
An experimental charge density distribution of 2-nitroimidazole was determined from high-resolution X-ray diffraction and the Hansen-Coppens multipole model. The 2-nitroimidazole compound was crystallized and a high-angle X-ray diffraction intensity data set has been collected at low temperature (110 K). The structure was solved and further, an aspherical multipole model refinement was performed up to octapole level; the results were used to determine the structure, bond topological and electrostatic properties of the molecule. In the crystal, the molecule exhibits a planar structure and forms weak and strong intermolecular hydrogen-bonding interactions with the neighbouring molecules. The Hirshfeld surface of the molecule was plotted, which explores different types of intermolecular interactions and their strength. The topological analysis of electron density at the bond critical points (b.c.p.) of the molecule was performed, from that the electron density ρ(r) and the Laplacian of electron density ∇ρ(r) at the b.c.p.s of the molecule have been determined; these parameters show the charge concentration/depletion of the nitroimidazole bonds in the crystal. The electrostatic parameters like atomic charges and the dipole moment of the molecule were calculated. The electrostatic potential surface of the molecule has been plotted, and it displays a large electronegative region around the nitro group. All the experimental results were compared with the corresponding theoretical calculations performed using CRYSTAL09.
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