Head and neck squamous cell carcinoma (HNSCC) is an aggressive disease marked by frequent recurrence and metastasis and stagnant survival rates. To enhance molecular knowledge of HNSCC and define a non-coding RNA (ncRNA) landscape of the disease, we profiled the transcriptome-wide dysregulation of long non-coding RNA (lncRNA), microRNA (miRNA), and PIWI-interacting RNA (piRNA) using RNA-sequencing data from 422 HNSCC patients in The Cancer Genome Atlas (TCGA). 307 non-coding transcripts differentially expressed in HNSCC were significantly correlated with patient survival, and associated with mutations in TP53, CDKN2A, CASP8, PRDM9, and FBXW7 and copy number variations in chromosomes 3, 5, 7, and 18. We also observed widespread ncRNA correlation to concurrent TP53 and chromosome 3p loss, a compelling predictor of poor prognosis in HNSCCs. Three selected ncRNAs were additionally associated with tumor stage, HPV status, and other clinical characteristics, and modulation of their expression in vitro reveals differential regulation of genes involved in epithelial-mesenchymal transition and apoptotic response. This comprehensive characterization of the HNSCC non-coding transcriptome introduces new layers of understanding for the disease, and nominates a novel panel of transcripts with potential utility as prognostic markers or therapeutic targets.
Electronic structure near Fermi level of Pr 2 CoFeO 6 (at 300 K) was investigated by X-ray photoemission spectroscopy (XPS) technique. All three cations, i.e., Pr, Co and Fe were found to be trivalent in nature. XPS analysis also suggested the system to be insulating in nature. Moreover, Raman spectroscopy study indicated the random distribution of the B-site ions (Co/Fe) triggered by same charge states. In temperature-dependent Raman study, the relative heights of the two observed phonon modes exhibited anomalous behaviour near magnetic transition temperature T N~2 70 K, thus indicating towards interplay between spin and phonon in the system. Furthermore, clear anomalous softening was observed below T N which confirmed the existence of strong spin-phonon coupling occurring for at least two phonon modes of the system. The line width analysis of the phonon modes essentially ruled out the role of magnetostriction effect in the observed phonon anomaly. The investigation of the lattice parameter variation across T N (obtained from the temperature-dependent neutron diffraction measurements) further confirmed the existence of the spin-phonon coupling.
The magnetic spin ordering and the magnetization dynamics of a double perovskite Pr2CoFeO6 have been investigated by employing the (dc and ac) magnetization and neutron powder diffraction techniques. The study revealed that Pr2CoFeO6 adopted a B-site disordered orthorhombic structure (Pnma). Furthermore, ab initio band structure calculations suggested an insulating antiferromagnetic ground state. Magnetization measurements revealed that the system possesses a spectrum of competing magnetic phases, viz., long range canted antiferromagnetic (AFM) spin ordering (TN ∼ 269 K), Griffiths-like phase, re-entrant cluster glass (TG ∼ 34 K), and exchange bias effects. The neutron diffraction study divulged the exhibition of a long range G-type of canted AFM spin ordering. The random nonmagnetic dilution of magnetic Fe3+ (high spin) ions by Co3+ (low spin) ions due to B-site disorder essentially played a crucial role in manifesting such magnetic properties of the system.
Some novel magnetic behaviours in double perovskite Eu 2 CoMnO 6 (ECMO) have been reported. The x-ray photoemission spectroscopy study shows the presence of mixed valence states of transition metal ions. The UV-visible absorption spectroscopic study suggests that the ECMO has a direct wide band gap. A second-order magnetic phase transition as a sudden jump in the magnetization curve has been observed around 124.5 K. The large bifurcation between the zero field cooling and field cooling, suggests existence of strong spin frustration in the system. The inverse DC susceptibility confirms the presence of the Griffiths like phase. Sharp steps in magnetization have been observed in the M-H curve at 2 K, which vanishes on increasing temperature. The AC susceptibility study demonstrates the Hopkinson like effect as well as the presence of volume spin-glass-like behaviour. The temperature dependent Raman spectrum shows the presence of spin-phonon coupling.
Electronic structure, electrical transport, dc and ac magnetization properties of the hole substituted (Sr 2+ ) partially B-site disordered double perovskite Pr 2-x Sr x CoMnO 6 system have been investigated.Electronic structure was probed by employing X-ray photoemission spectroscopy (XPS) measurements. The study suggested the presence of mixed valence states of the B-site ions (Co 2+ /Co 3+ and Mn 3+ /Mn 4+ ) with significant enhancement of the average oxidation states due to hole doping. The mere absence of electronic states near the Fermi level in the valence band (VB) spectra for both of the pure (x=0.0) and Sr doped (x=0.5) systems indicated the insulating nature of the samples. Sr substitution is observed to increase the spectral weight near the Fermi level suggesting for an enhanced conductivity of the hole doped system. The temperature variation of electrical resistivity measurements revealed the insulating nature for both the systems, thus supporting the VB spectra results. The resistivity curves were observed to follow the variable range hopping (VRH) mechanism in the entire temperature range while the analysis showed a significance enhancement in the carrier concentration due to the hole doping. The dc magnetization data divulged a Griffiths like phase above the long range ordering temperature. A typical re-entrant spin glass like phase driven by the inherent anti-site disorder (ASD) has been maidenly recognized by ac susceptibility study for both the pure and doped systems. Most interestingly, the emergence of a new cluster glass like phase (immediately below the magnetic ordering temperature and above the spin-glass transition temperature) solely driven by the Sr substitution has been unravelled by ac magnetization dynamics study. Observation of these dual glassy states in a single system is scarce and hence placed the present system amongst the rare materials. The isothermal magnetization measurements further probed the exhibition of the giant exchange bias effect emanated from the existence of multiple magnetic phases.
Attempts are underway to construct a retinal prosthesis to recover limited vision for blind patients with retinitis pigmentosa using implantable electronic devices. These microchips provide electrical stimulation to damaged retinal tissues using an array of stimulus circuits. This paper describes improvements to conventional circuit designs with significantly decreased implementation area and the ability to support arbitrary stimulus waveforms where an array of such stimulus circuits is required. This yields greater spatial resolution in stimulation owing to more stimulus circuits per chip area. Also introduced are digital-to-analog converter gain prescalar and dc-offset circuits which tune the stimulus circuits to an optimally effective range due to variation in retinal degradation. The prototype chip was fabricated by MOSIS in 1.2-m CMOS technology.Index Terms-Age-related macular degeneration, digitalto-analog converter (DAC), electrical stimulation, retinal prosthesis, retinitis pigmentosa, visual prosthesis.
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