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SummaryA new mechanistic model of the photosynthesis-light response is developed based on photosynthetic electron transport via photosystem II (PSII) to specifically describe light-harvesting characteristics and associated biophysical parameters of photosynthetic pigment molecules. This model parameterizes 'core' characteristics not only of the light response but also of difficult to measure physical parameters of photosynthetic pigment molecules in plants.Application of the model to two C 3 and two C 4 species grown under the same conditions demonstrated that the model reproduced extremely well (r 2 > 0.992) the light response trends of both electron transport and CO 2 uptake. In all cases, the effective absorption cross-section of photosynthetic pigment molecules decreased with increasing light intensity, demonstrating novel operation of a key mechanism for plants to avoid high light damage.In parameterizing these previously difficult to measure characteristics of light harvesting in higher plants, the model provides a new means to understand the mechanistic processes underpinning variability of CO 2 uptake, for example, photosynthetic down-regulation or reversible photoinhibition induced by high light and photoprotection. However, an important next step is validating this parameterization, possibly through application to less structurally complex organisms such as single-celled algae.

The ability of silver fir (Abies alba Mill.) to acclimate to different levels of irradiance was tested with 3-year-old seedlings, grown for 2 years in a nursery close to Nancy (eastern France) under 100, 48, 18 and 8% of incident irradiance (neutral shade nets). Growth, total nutrients in needles, maximal carboxylation rate (V cmax ), maximal light driven electron flow (J max ) and the relative amount of nitrogen allocated to photosynthetic processes (carboxylation, bioenergetics, light harvesting) were investigated. The sensitivity to drought stress was assessed among the phenotypes resulting from light acclimation. Leader-shoot and branch elongation were greatest under 18% irradiance. Total seedling biomass, root-to-total biomass ratio, total leaf area, leaf mass-toarea ratio and needle-area based nitrogen content responded positively to increasing irradiance while leaf area ratio decreased. Both V cmax and J max increased by a factor of 1.6 and 1.8, respectively, from the lowest to the highest irradiance but the ratio J max /V cmax remained stable. All these parameters, expressed on a projected needle area basis, remained within the lower range of values measured for broadleaved trees. Relative allocation of needle N to the different components of the photosynthetic apparatus was very low: 12, 3 and 7% of total nitrogen were invested in carboxylation, bioenergetics and light harvesting, respectively. The relative allocation of nitrogen to carboxylation and bioenergetics remained stable while that to light harvesting decreased with increasing irradiance. During drought, seedlings preacclimated to shade closed their stomata at higher predawn needle water potential than those which were grown under higher irradiance. Critical temperature for PSII photochemistry in needles was unaffected by irradiance and was close to 47C. Drought significantly increased the critical temperature up to 51C. In general, the amplitude of responses of silver fir to changing irradiance (phenotypic plasticity) was smaller than that recorded in broadleaved species.

Models describing the light response of photosynthetic electron transport rate (ETR) are routinely used to determine how light absorption influences energy, reducing power and yields of primary productivity; however, no single model is currently able to provide insight into the fundamental processes that implicitly govern the variability of light absorption. Here we present development and application of a new mechanistic model of ETR for photosystem II based on the light harvesting (absorption and transfer to the core 'reaction centres') characteristics of photosynthetic pigment molecules. Within this model a series of equations are used to describe novel biophysical and biochemical characteristics of photosynthetic pigment molecules and in turn light harvesting; specifically, the eigen-absorption cross-section and the minimum average lifetime of photosynthetic pigment molecules in the excited state, which describe the ability of light absorption of photosynthetic pigment molecules and retention time of excitons in the excited state but are difficult to be measured directly. We applied this model to a series of previously collected fluorescence data and demonstrated that our model described well the light response curves of ETR, regardless of whether dynamic down-regulation of PSII occurs, for a range of photosynthetic organisms (Abies alba, Picea abies, Pinus mugo and Emiliania huxleyi). Inherent estimated parameters (e.g. maximum ETR and the saturation irradiance) by our model are in very close agreement with the measured data. Overall, our mechanistic model potentially provides novel insights into the regulation of ETR by light harvesting properties as well as dynamical down-regulation of PSII.

Leaves developing in different irradiances undergo structural and functional acclimation, although the extent of trait plasticity is species specific. We tested the hypothesis that irradiance-induced plasticity of photosynthetic and anatomical traits is lower in highly shade-tolerant species than in moderately shade-tolerant species. Seedlings of two evergreen conifers, shade-tolerant Abies alba Mill. and moderately shade-tolerant Picea abies Karst., and two deciduous angiosperm species, highly shade-tolerant Fagus sylvatica L. and moderately shade-tolerant Acer pseudoplatanus L., were grown in deep shade (LL, 5% of full irradiance) or in full solar irradiance (HL) during 2003 and 2004. Steady state responses of quantum yield of PSII (Phi(PSII)), apparent electron transport rate (ETR), nonphotochemical quenching (NPQ) and photochemical quenching (qP) were generally modified by the light environment, with slower declines in Phi(PSII) and qP and greater maximal ETR and NPQ values in HL plants in at least one season; however, no link between quantitative measures of plasticity of these traits and shade tolerance was found. Plasticity of nine anatomical traits (including palisade cell length, which was reduced in LL) showed no relationship with shade tolerance, but was less in conifers than in deciduous trees, suggesting that leaf life span may be a significant correlate of plasticity. When LL-acclimated plants were exposed to HL conditions, the degree and duration of photoinhibition (measured as a decline in maximum quantum yield) was greatest in F. sylvatica, much lower in P. abies and A. alba, and lowest in A. pseudoplatanus. Thus, as with the other traits studied, vulnerability to photoinhibition showed no relationship with shade tolerance.

Susceptibility to photoinhibition of the evergreen conifers Abies alba Mill., Picea abies (L.) Karst. and Pinus mugo Turra was investigated in an unheated greenhouse during winter and spring 2003. Photosynthetic performance of the seedlings was assessed by chlorophyll a fluorescence and analyses of chlorophyll and total carotenoid concentrations in needles. During winter months, maximum quantum yield of PSII photochemistry (ratio of variable to maximum fluorescence, Fv/Fm) was significantly greater in A. alba than in P. abies and P. mugo. Abies alba also sustained higher maximum apparent electron transport rate (ETRmax) than P. abies and P. mugo. Total concentrations of chlorophyll and carotenoids in needles decreased during the winter in P. mugo and P. abies, but remained stable in A. alba. For all species, Fv/Fm decreased from December until February and then increased to a maximum in April. Photoinhibition was greatest (Fv/Fm < 0.80) in all seedlings in February, the month with the lowest mean temperature. Saturating photosynthetic photon flux (PPFsat) and ETRmax were positively related to air temperature. All species had lower values of ETRmax and PPFsat in winter than in spring. Non-photochemical quenching of chlorophyll fluorescence (NPQ) was highest at low air temperatures. Differences among species in susceptibility to winter photoinhibition resulted from their specific light preferences and led to different mechanisms to cope with photoinhibitory stress. The more shade-tolerant A. alba sustained a higher photosynthetic capacity in winter than P. abies and P. mugo. Winter photoinhibition in P. abies, P. mugo and, to a lesser extent, in A. alba may reflect adaptive photoprotection of the photosynthetic apparatus in winter.

Given prior evidence for local ecotypic and species-specific adaptation in trees, we hypothesized that: (1) Acer rubrum and Quercus rubra provenances with different climate origins should differ in photosynthetic temperature optimum (T opt ) even after long-term growth in a common environment; (2) congeneric species Populus tremuloides and Populus deltoides with differing but overlapping ranges should not differ in T opt when co-occurring, due to the likelihood of both ecotypic thermal adaptation and phenotypic thermal acclimation. To address these questions, we investigated the temperature responses of pairs of A. rubrum and Q. rubra provenances planted in a common garden and the temperature responses of P. tremuloides and P. deltoides at four sites where the species ranges overlap in Minnesota, USA. Both studies showed significant signals of temperature adaptation. The provenances of both A. rubrum and Q. rubra that originated from northern sites with lower ambient temperature had lower T opt . This supported the hypothesis about the dominance of local ecotypic adaptation of photosynthesis to temperature despite opportunity for both long-term (12-year) acclimation to the common-garden temperature regime and short-term temperature acclimation. However, acclimation capacity to the temperatures experienced in the days and weeks before the gas exchange measurements differed among the contrasting provenances suggesting that the observed differences in T opt could be due to either fixed genotypic differences (e.g., adaptive T opt ), acclimation of T opt , or both. In contrast, the Populus species with the colder home range, P. tremuloides, showed significantly (P \ 0.05) lower T opt on average than co-occurring P. deltoides. Thus, despite the opportunity for both ecotypic adaptation and local acclimation, phylogenetic inertia still constrained the species with the colder overall range to a different temperature optimum than the one with a warmer overall range. Our results also imply that rapid but modest climate change may create mismatches between photosynthetic physiology and local climate because of lags in population or species-level adaptation.Electronic supplementary material The online version of this article

To evaluate the acclimative ability of current-year and previous-year needles of a shade tolerant conifer Taxus baccata L. to contrasting irradiance conditions, seedlings were raised under 27% solar irradiance and at 3 years of age they were transferred to an experimental garden and grown for one season under full irradiance (HL), 18% irradiance (ML) or 5% irradiance (LL). Whereas previous year needles did not change anatomically, current year needles in HL were thicker and had a thicker palisade and spongy mesophyll, and greater leaf mass per area than ML or LL needles. LL needles had greater nitrogen concentration than HL needles irrespective of age but only previous year LL needles also had an increased N per area content, thanks to their lack of reduction in LMA. Adjustment of chlorophyll and carotenoid content occurred in both needle age classes with LL and ML needles having much higher concentrations but, in current year needles, only slightly higher per area content than HL needles. Chlorophyll a/b ratio was not affected by age or irradiance. These modifications had no significant effect on photosynthetic capacities, which did not significantly differ between the age classes in HL or LL treatment and between treatments. On the other hand, high growth irradiance resulted in a greater photochemical yield, photochemical quenching, apparent electron transport rate and inducible non-photochemical quenching in needles formed in the current season. In previous year needles, however, only inducible NPQ was enhanced by high irradiance with other parameters remaining identical among treatments. To test sensitivity to photoinhibition, at the end of the summer plants from the three irradiance levels were transferred to a HL situation and F (v)/F (M) was determined over the following 18 days. Sensitivity to photoinhibition was negatively related to growth irradiance and previous year needles were less photoinhibited than current year needles. Thus, differences in acclimation ability between needle age classes were most pronounced at the level of anatomy and light reactions of photosynthesis, both of which showed almost no plasticity in previous year needles but were considerably modified by irradiance in current year needles.