Late embryogenesis abundant (LEA) proteins are large and diverse group of polypeptides which were first identified during seed dehydration and then in vegetative plant tissues during different stress responses. Now, gene family members of LEA proteins have been detected in various organisms. However, there is no report for this protein family in watermelon and melon until this study. A total of 73 genes from watermelon () and 61 genes from melon () were identified in this comprehensive study. They were classified into four and three distinct clusters in watermelon and melon, respectively. There was a correlation between gene structure and motif composition among each LEA groups. Segmental duplication played an important role for gene expansion in watermelon. Maximum gene ontology of genes was observed with poplar genes. For evaluation of tissue specific expression patterns of and genes, publicly available RNA-seq data were analyzed. The expression analysis of selected genes in root and leaf tissues of drought-stressed watermelon and melon were examined using qRT-PCR. Among them, --- genes were quickly induced after drought application. Therefore, they might be considered as early response genes for water limitation conditions in watermelon. In addition, -- genes were found to be up-regulated in both tissues of melon under drought stress. Our results can open up new frontiers about understanding of functions of these important family members under normal developmental stages and stress conditions by bioinformatics and transcriptomic approaches.
Legumes are rich in protein and phytochemicals and have provided a healthy diet for human beings for thousands of years. In recognition of the important role they play in human nutrition and agricultural production, the researchers have made great efforts to gain new genetic traits in legumes such as yield, stress tolerance, and nutritional quality. In recent years, the significant increase in genomic resources for legume plants has prepared the groundwork for applying cutting-edge breeding technologies, such as transgenic technologies, genome editing, and genomic selection for crop improvement. In addition to the different genome editing technologies including the CRISPR/Cas9-based genome editing system, this review article discusses the recent advances in plant-specific gene-editing methods, as well as problems and potential benefits associated with the improvement of legume crops with important agronomic properties. The genome editing technologies have been effectively used in different legume plants including model legumes like alfalfa and lotus, as well as crops like soybean, cowpea, and chickpea. We also discussed gene-editing methods used in legumes and the improvements of agronomic traits in model and recalcitrant legumes. Despite the immense opportunities genome editing can offer to the breeding of legumes, governmental regulatory restrictions present a major concern. In this context, the comparison of the regulatory framework of genome editing strategies in the European Union and the United States of America was also discussed. Gene-editing technologies have opened up new possibilities for the improvement of significant agronomic traits in legume breeding.
Aim of Study: It was aimed to determine the chemical composition, antioxidant and antibacterial activity of the Thymus praecox which distributed in the Kastamonu region.Material and methods: Spectroscopic and chromotographic analysis were applied in the determination of the chemical composition. Thyme extracts were prepared using five different solvents. In Thymus praecox, the presence of flavonoids using HPLC and the chemical content of essential oil using GC-MS were investigated. The analyses of the mineral were determined in leaf and stem of thyme by ICP-OES. Antioxidant capacity was determined using two methods such as DPPH free radical scavenging and H2O2 scavenging. Antibacterial activity on ten bacteria, Gram (+) and Gram (-) was tested using the disc diffusion method.Main results: Experimental results showed that thyme extracts have antibacterial activities against some bacteria. As a result, it was found that the most affected bacteria was S. aureus. Inhibition zone diameter was determined to be between 8-12 mm. The effect of solvent on antibacterial activity, antioxidant capacity, total phenolic and total flavonoid amounts were observed.Highlights: These results showed that T. praecox has the potential to be used as a natural antimicrobial and antioxidant agent, and can be used as a natural supportive treatment.
Aim of study: Five Abies taxa naturally distributed in Turkey. Abies nordmanniana has three subspecies and A. cilica has two subspecies. In this study, we aimed to show phylogenetic relationships both in Turkish taxa and in other Abies taxa from around the world based on cpDNA regions, trnR-trnN and rps18-rpl20 regions.Material and methods: Following CTAB-based DNA isolation method, the relevant fir DNA regions were amplified and sequenced. Phylogenetic trees were constructed using maximum likelihood method with 1000 bootstrap replicates.Main results: It was difficult to make distinctions among the Turkish Abies taxa based on the sequenced DNA regions. Based on rps18-rpl20 phylogenetic tree, some members of Abies cilicica subsp. isaurica, A. nordmanniana subsp. equi-trojani and A. cilicica subsp. cilicica were in the same clade with A. spectabilis and A. densa; However, some members of A. nordmanniana subsp. bornmuelleriana, A. cilicica subsp. isaurica and A. nordmanniana subsp. equi-trojani were placed in a clade with A. alba placed near Turkey and A. amabilis known from North America.Highlights: This study provides new insights into the distribution of cpDNA variation in Abies species in Turkey and the genetic variation between firs in Turkey and the rest of the world.
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